There is a newer version of this record available.

Software Open Access

GMOD/Apollo: 2.3.1

Nathan Dunn; Colin Diesh; Deepak Unni; Robert Buels; Helena Rasche; Anthony Bretaudeau; Luke Sargent; Robert Syme; Tim Stickland; Eric Y; Michael Paulini; Ian Holmes


JSON-LD (schema.org) Export

{
  "description": "<p>2.3.1 <strong>Official Release</strong></p>\n\n<p>Many bug fixes and some minor enhancements. Many thanks to the community for reporting, testing, and fixing these issues.</p>\n\n<p><a href=\"https://github.com/GMOD/Apollo/blob/master/ChangeLog.md#231\">https://github.com/GMOD/Apollo/blob/master/ChangeLog.md#231</a></p>\n\n<p>Bug Fixes</p>\n\n<ul>\n\t<li>Fixed issue when dragging features to resize was not providing an indicator box <a href=\"https://github.com/GMOD/Apollo/pull/1988\">1988</a></li>\n\t<li>Fixed issue when sequence alterations were not rendering the full height of the sequence track <a href=\"https://github.com/GMOD/Apollo/pull/2049\">2049</a></li>\n\t<li>Making organisms obsolete should remove associated permissions <a href=\"https://github.com/GMOD/Apollo/pull/2043\">2043</a></li>\n\t<li>User-created features taken from split reads should create features with introns <a href=\"https://github.com/GMOD/Apollo/pull/2036\">2036</a></li>\n\t<li>Should indicate split reads properly in evidence <a href=\"https://github.com/GMOD/Apollo/pull/2034\">2034</a><a href=\"https://github.com/GMOD/Apollo/pull/2054\">2054</a></li>\n\t<li>Temporary files not removed during export of GFF3 or other file types <a href=\"https://github.com/GMOD/Apollo/pull/1966\">1966</a></li>\n\t<li>Fixed issue where you could not alter an isoform after deleting a gene name <a href=\"https://github.com/GMOD/Apollo/pull/1961\">1961</a></li>\n\t<li>Fixed some minor issues associated with sequence alterations <a href=\"https://github.com/GMOD/Apollo/pull/1497\">1497</a></li>\n\t<li>Multiple owners tagged on GFF3 export <a href=\"https://github.com/GMOD/Apollo/pull/29\">29</a></li>\n\t<li>Setting gene description puts UcA into a bad state <a href=\"https://github.com/GMOD/Apollo/issues/2056\">2056</a></li>\n\t<li>Fixes plugin inclusion error by reverting prior fix <a href=\"https://github.com/GMOD/Apollo/issues/2055\">2055</a></li>\n</ul>\n\n<p>Minor Features</p>\n\n<ul>\n\t<li>Allowed duplication of organism from the Organism Panel <a href=\"https://github.com/GMOD/Apollo/pull/1968\">1968</a></li>\n\t<li>Allows making an organism obsolete <a href=\"https://github.com/GMOD/Apollo/pull/1967\">1967</a></li>\n\t<li>Create a filter and flag for inactive users <a href=\"https://github.com/GMOD/Apollo/pull/1937\">1937</a></li>\n\t<li>Allowed deletion of feature from the Sequence and Annotator Panels <a href=\"https://github.com/GMOD/Apollo/pull/2040\">2040</a></li>\n\t<li>Allow export of orig_id as an optional attribute <a href=\"https://github.com/GMOD/Apollo/pull/2002\">2002</a></li>\n</ul>", 
  "license": "http://www.opensource.org/licenses/BSD-2-Clause", 
  "creator": [
    {
      "affiliation": "Lawrence Berkeley National Lab", 
      "@type": "Person", 
      "name": "Nathan Dunn"
    }, 
    {
      "affiliation": "UC Berkeley", 
      "@type": "Person", 
      "name": "Colin Diesh"
    }, 
    {
      "affiliation": "Lawrence Berkeley National Lab", 
      "@type": "Person", 
      "name": "Deepak Unni"
    }, 
    {
      "affiliation": "UC Berkeley", 
      "@type": "Person", 
      "name": "Robert Buels"
    }, 
    {
      "affiliation": "@BackofenLab", 
      "@type": "Person", 
      "name": "Helena Rasche"
    }, 
    {
      "affiliation": "BIPAA/GenOuest", 
      "@type": "Person", 
      "name": "Anthony Bretaudeau"
    }, 
    {
      "affiliation": "OHSU Computational Biology Department", 
      "@type": "Person", 
      "name": "Luke Sargent"
    }, 
    {
      "affiliation": "Curtin University", 
      "@type": "Person", 
      "name": "Robert Syme"
    }, 
    {
      "affiliation": "Wellcome Sanger Institute", 
      "@type": "Person", 
      "name": "Tim Stickland"
    }, 
    {
      "affiliation": "UC Berkeley", 
      "@type": "Person", 
      "name": "Eric Y"
    }, 
    {
      "affiliation": "WormBase", 
      "@type": "Person", 
      "name": "Michael Paulini"
    }, 
    {
      "affiliation": "UC Berkeley", 
      "@type": "Person", 
      "name": "Ian Holmes"
    }
  ], 
  "url": "https://zenodo.org/record/2572932", 
  "codeRepository": "https://github.com/GMOD/Apollo/tree/2.3.1", 
  "datePublished": "2019-02-19", 
  "version": "2.3.1", 
  "keywords": [
    "genome annotation", 
    "biocuration"
  ], 
  "@context": "https://schema.org/", 
  "identifier": "https://doi.org/10.5281/zenodo.2572932", 
  "@id": "https://doi.org/10.5281/zenodo.2572932", 
  "@type": "SoftwareSourceCode", 
  "name": "GMOD/Apollo: 2.3.1"
}
999
247
views
downloads
All versions This version
Views 99916
Downloads 2474
Data volume 21.8 GB357.9 MB
Unique views 74613
Unique downloads 463

Share

Cite as