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GMOD/Apollo: 2.3.1

Nathan Dunn; Colin Diesh; Deepak Unni; Robert Buels; Helena Rasche; Anthony Bretaudeau; Luke Sargent; Robert Syme; Tim Stickland; Eric Y; Michael Paulini; Ian Holmes

2.3.1 Official Release

Many bug fixes and some minor enhancements. Many thanks to the community for reporting, testing, and fixing these issues.

https://github.com/GMOD/Apollo/blob/master/ChangeLog.md#231

Bug Fixes

  • Fixed issue when dragging features to resize was not providing an indicator box 1988
  • Fixed issue when sequence alterations were not rendering the full height of the sequence track 2049
  • Making organisms obsolete should remove associated permissions 2043
  • User-created features taken from split reads should create features with introns 2036
  • Should indicate split reads properly in evidence 20342054
  • Temporary files not removed during export of GFF3 or other file types 1966
  • Fixed issue where you could not alter an isoform after deleting a gene name 1961
  • Fixed some minor issues associated with sequence alterations 1497
  • Multiple owners tagged on GFF3 export 29
  • Setting gene description puts UcA into a bad state 2056
  • Fixes plugin inclusion error by reverting prior fix 2055

Minor Features

  • Allowed duplication of organism from the Organism Panel 1968
  • Allows making an organism obsolete 1967
  • Create a filter and flag for inactive users 1937
  • Allowed deletion of feature from the Sequence and Annotator Panels 2040
  • Allow export of orig_id as an optional attribute 2002

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