Published February 15, 2019
| Version v0.9.5
Software
Open
jefferis/rcatmaid: catmaid R package v0.9.5
Creators
- 1. MRC Laboratory of Molecular Biology
- 2. HHMI/JRC
- 3. @flyconnectome @VirtualFlyBrain
Description
catmaid 0.9.5
- Stop
catmaid_get_connector_table()
returning duplicate rows when there are multiple connections between the same partner neurons at a given connector. Thanks to Shanice Bailey and Istvan Taisz for the bug report (#106). - Pass on pid in
catmaid_skids()
, thereby fixing an issue withread.neurons.catmaid()
with annotation queries when project id is not 1. Thanks to Marta Costa for the bug report (#105)
write_catmaid_selection()
accepts annotations/name specs
- workaround for bug in
catmaid_version()
(#103). Still waiting on changes in CATMAID for more permanent fix. - fix import error with jsonlite version >=1.6
- Teach
catmaid_get_volumelist()
about new API return format (#102) - Sync
catmaid_get_treenode_table()
with API (#101) - make
catmaid_query_by_name()
treat query as regex (#100) - Fix bug in metadata for read_catmaid_selection (#99)
- Sort tags for neurons so that they are always returned in the same order (#98)
- Add
catmaid_get_node_count()
to get the number of nodes per skeleton - Teach
catmaid_get_treenodes_detail()
to search by labels - can use this e.g. to find all nodes (regardless of neuron) with a certain tag e.g.soma
. - Fix bug in
nsoma()
for duplicate skids; also speed-up - Make
catmaid_login()
explain why passing server directly doesn't work - Add name|nodes to results of
catmaid_get_connector_table()
- Speed-up in
catmaid_get_compact_skeleton()
/read.neuron.catmaid()
- Teach
catmaid_get_node_count()
to handle NAs/dupes
Files
jefferis/rcatmaid-v0.9.5.zip
Files
(417.5 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/jefferis/rcatmaid/tree/v0.9.5 (URL)