Technical note Open Access

Nanopore sequencing of genomic DNA from Magnaporthe oryzae isolates from different hosts

Joe Win; Emilie Chanclud; C. Sarai Reyes-Avila; Thorsten Langner; Tofazzal Islam; Sophien Kamoun


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            <foaf:name>Bangabandhu Sheikh Mujibur Rahman Agricultural University</foaf:name>
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    <dct:title>Nanopore sequencing of genomic DNA from Magnaporthe oryzae isolates from different hosts</dct:title>
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    <dcat:keyword>plant pathology</dcat:keyword>
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    <dcat:keyword>fungi</dcat:keyword>
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    <dct:description>&lt;p&gt;&lt;strong&gt;We report long-range sequencing of eight isolates of&amp;nbsp;&lt;em&gt;Magnaporthe oryzae&lt;/em&gt;(Syn.&amp;nbsp;&lt;em&gt;Pyricularia oryzae&lt;/em&gt;) from wheat, rice, foxtail millet and goosegrass using nanopore MinION. Our aim is to obtain chromosome-level genome assemblies that are freely available for public access to be scrutinized for genome rearrangements and structural variation.&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;&lt;em&gt;Magnaporthe oryzae&lt;/em&gt;(Syn.&amp;nbsp;&lt;em&gt;Pyricularia oryzae&lt;/em&gt;) is a notorious fungus known for causing blast disease on rice and wheat with devastating effect on grain yield.&amp;nbsp;&lt;em&gt;M. oryzae&lt;/em&gt;host range includes several other cereal crops such as oat, finger millet and foxtail millet as well as wild grasses.&amp;nbsp;&lt;em&gt;M. oryzae&lt;/em&gt;is found all over the world wherever warm temperature and high humidity are common. Although lineages of&amp;nbsp;&lt;em&gt;M. oryzae&lt;/em&gt;tend to be adapted to a particular host, this pathogen can shift from one host to another when the conditions permit&amp;nbsp;(Couch&amp;nbsp;&lt;em&gt;et al.&lt;/em&gt;2005). We hypothesize that structural variation contributes to adaptation to new hosts and environmental conditions following, for example, the model proposed by&amp;nbsp;Chuma&amp;nbsp;&lt;em&gt;et al.&lt;/em&gt;(2011). To generate the genomics data that would enable such analyses, we sequenced eight isolates of&amp;nbsp;&lt;em&gt;M. oryzae&lt;/em&gt;from four different hosts using long-range nanonpore MinION with the aim of providing chromosome-level genome assemblies that are freely available for public access.&amp;nbsp;&lt;/p&gt;</dct:description>
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