Software for paper: Two is better than one: Studying host plant/fungal compatibility by using a hybrid pathogen

These files represent software I developed as part of the publication: Two is better than one: Studying host plant/fungal compatibility by using a hybrid pathogen.

One file is an installer for a CLC workflow which take NGS data from fungal hybrids and assigns the reads that either come (1) specifically from U. bromivora or (2) from either U. hordei or are shared between U. hordei and U. bromivora.

The other file contains the Bash and R scripts that I used to a make a table comparing how much of each hybrid strain's genome came from either U. bromivora or U. hordei.This also let me evaluate the quality of the sequencing.