Python 2.7.10 (default, Feb  7 2017, 00:08:15) 

Modules used in SMG_prox_fam_ver3_Pip.py and SMG_resistance_ver3_Pip.py:
import csv, sys
import argparse
import MySQLdb as mdb
from datetime import datetime
import time

Modules used in SMG_Align_Trim_pip.py 
import os
from Bio import SeqIO