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nextgenusfs/amptk: AMPtk v1.3.0

Jon Love; Jon Palmer; Jason Stajich; Franzwagner Ternus; Vladimir Mikryukov

This is a major reorganization of the code so it is "properly packaged" and can be installed with pip and hopefully conda. After v1.2.4 there were apparently changes to conda that would not allow the scripts to build with the previous code organization. I've then also fixed a few of the bugs that have shown up more recently, including:

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