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AnnoTree: Functionally Annotated Tree of Life

Mendler, Kerrin; Doxey, Andrew; Chen, Han


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<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Mendler, Kerrin</dc:creator>
  <dc:creator>Doxey, Andrew</dc:creator>
  <dc:creator>Chen, Han</dc:creator>
  <dc:date>2018-10-22</dc:date>
  <dc:description>Current version:
2019-02-01: This file is a MySQL (v5.7) dump for AnnoTree, a functionally annotated tree of life. It includes the databases 'gtdb_bacteria_RS86' and 'gtdb_archaea_RS86'. Both databases include Pfam (v27), KEGG Ontology (from the UniRef100 database downloaded March 6, 2018), and TIGRFAM (v15) annotations for the representative genomes in GTDB release 03-RS86.

Please refer to http://annotree.uwaterloo.ca for the full site.

 

Older versions:
2018-10-22: MySQL dump file (v5.7) containing the 'gtdb_bacteria' database for GTDB release 02-RS83 for use with AnnoTree. Functional annotations include Pfam (v27) and KEGG Ontology (from the UniRef100 database downloaded March 6, 2018). Corresponds to AnnoTree version 1.0.0 before the integration of Archaea.</dc:description>
  <dc:identifier>https://zenodo.org/record/2555457</dc:identifier>
  <dc:identifier>10.5281/zenodo.2555457</dc:identifier>
  <dc:identifier>oai:zenodo.org:2555457</dc:identifier>
  <dc:relation>doi:10.5281/zenodo.1468868</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/zenodo</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>http://creativecommons.org/licenses/by-sa/4.0/legalcode</dc:rights>
  <dc:title>AnnoTree: Functionally Annotated Tree of Life</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
</oai_dc:dc>
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