Dataset Open Access

AnnoTree: Functionally Annotated Tree of Life

Mendler, Kerrin; Doxey, Andrew; Chen, Han


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        "affiliation": "University of Waterloo", 
        "name": "Mendler, Kerrin"
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        "affiliation": "University of Waterloo", 
        "name": "Doxey, Andrew"
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    "description": "<p><strong>Current version:</strong><br>\n2019-02-01: This file is a MySQL (v5.7) dump&nbsp;for AnnoTree, a functionally annotated tree of life.&nbsp;It includes the databases &#39;gtdb_bacteria_RS86&#39; and &#39;gtdb_archaea_RS86&#39;. Both databases include <a href=\"https://pfam.xfam.org/\">Pfam</a>&nbsp;(v27), <a href=\"https://www.genome.jp/kegg/\">KEGG</a> Ontology (from the <a href=\"https://www.uniprot.org/help/uniref\">UniRef100</a> database downloaded March 6, 2018), and <a href=\"http://tigrfams.jcvi.org/cgi-bin/index.cgi\">TIGRFAM</a>&nbsp;(v15) annotations for the representative genomes in <a href=\"http://gtdb.ecogenomic.org/\">GTDB</a> release 03-RS86.</p>\n\n<p>Please refer to <a href=\"http://annotree.uwaterloo.ca\">http://annotree.uwaterloo.ca</a> for the full site.</p>\n\n<p>&nbsp;</p>\n\n<p><strong>Older versions:</strong><br>\n2018-10-22: MySQL dump file (v5.7)&nbsp;containing the &#39;gtdb_bacteria&#39; database for GTDB release 02-RS83 for use with AnnoTree. Functional annotations include <a href=\"https://pfam.xfam.org/\">Pfam</a>&nbsp;(v27) and&nbsp;<a href=\"https://www.genome.jp/kegg/\">KEGG</a> Ontology (from the <a href=\"https://www.uniprot.org/help/uniref\">UniRef100</a> database downloaded March 6, 2018). Corresponds to AnnoTree version 1.0.0 before the integration of Archaea.</p>", 
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Downloads 6535
Data volume 1.3 TB735.4 GB
Unique views 253209
Unique downloads 5125

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