Dataset Open Access

AnnoTree: Functionally Annotated Tree of Life

Mendler, Kerrin; Doxey, Andrew; Chen, Han


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  <identifier identifierType="DOI">10.5281/zenodo.2555457</identifier>
  <creators>
    <creator>
      <creatorName>Mendler, Kerrin</creatorName>
      <givenName>Kerrin</givenName>
      <familyName>Mendler</familyName>
      <affiliation>University of Waterloo</affiliation>
    </creator>
    <creator>
      <creatorName>Doxey, Andrew</creatorName>
      <givenName>Andrew</givenName>
      <familyName>Doxey</familyName>
      <affiliation>University of Waterloo</affiliation>
    </creator>
    <creator>
      <creatorName>Chen, Han</creatorName>
      <givenName>Han</givenName>
      <familyName>Chen</familyName>
      <affiliation>University of Waterloo</affiliation>
    </creator>
  </creators>
  <titles>
    <title>AnnoTree: Functionally Annotated Tree of Life</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2018</publicationYear>
  <dates>
    <date dateType="Issued">2018-10-22</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/2555457</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.1468868</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/zenodo</relatedIdentifier>
  </relatedIdentifiers>
  <version>1.1.0</version>
  <rightsList>
    <rights rightsURI="http://creativecommons.org/licenses/by-sa/4.0/legalcode">Creative Commons Attribution Share Alike 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;&lt;strong&gt;Current version:&lt;/strong&gt;&lt;br&gt;
2019-02-01: This file is a MySQL (v5.7) dump&amp;nbsp;for AnnoTree, a functionally annotated tree of life.&amp;nbsp;It includes the databases &amp;#39;gtdb_bacteria_RS86&amp;#39; and &amp;#39;gtdb_archaea_RS86&amp;#39;. Both databases include &lt;a href="https://pfam.xfam.org/"&gt;Pfam&lt;/a&gt;&amp;nbsp;(v27), &lt;a href="https://www.genome.jp/kegg/"&gt;KEGG&lt;/a&gt; Ontology (from the &lt;a href="https://www.uniprot.org/help/uniref"&gt;UniRef100&lt;/a&gt; database downloaded March 6, 2018), and &lt;a href="http://tigrfams.jcvi.org/cgi-bin/index.cgi"&gt;TIGRFAM&lt;/a&gt;&amp;nbsp;(v15) annotations for the representative genomes in &lt;a href="http://gtdb.ecogenomic.org/"&gt;GTDB&lt;/a&gt; release 03-RS86.&lt;/p&gt;

&lt;p&gt;Please refer to &lt;a href="http://annotree.uwaterloo.ca"&gt;http://annotree.uwaterloo.ca&lt;/a&gt; for the full site.&lt;/p&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;Older versions:&lt;/strong&gt;&lt;br&gt;
2018-10-22: MySQL dump file (v5.7)&amp;nbsp;containing the &amp;#39;gtdb_bacteria&amp;#39; database for GTDB release 02-RS83 for use with AnnoTree. Functional annotations include &lt;a href="https://pfam.xfam.org/"&gt;Pfam&lt;/a&gt;&amp;nbsp;(v27) and&amp;nbsp;&lt;a href="https://www.genome.jp/kegg/"&gt;KEGG&lt;/a&gt; Ontology (from the &lt;a href="https://www.uniprot.org/help/uniref"&gt;UniRef100&lt;/a&gt; database downloaded March 6, 2018). Corresponds to AnnoTree version 1.0.0 before the integration of Archaea.&lt;/p&gt;</description>
  </descriptions>
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