Dataset Open Access

AnnoTree: Functionally Annotated Tree of Life

Mendler, Kerrin; Doxey, Andrew; Chen, Han


Citation Style Language JSON Export

{
  "DOI": "10.5281/zenodo.2555457", 
  "abstract": "<p><strong>Current version:</strong><br>\n2019-02-01: This file is a MySQL (v5.7) dump&nbsp;for AnnoTree, a functionally annotated tree of life.&nbsp;It includes the databases &#39;gtdb_bacteria_RS86&#39; and &#39;gtdb_archaea_RS86&#39;. Both databases include <a href=\"https://pfam.xfam.org/\">Pfam</a>&nbsp;(v27), <a href=\"https://www.genome.jp/kegg/\">KEGG</a> Ontology (from the <a href=\"https://www.uniprot.org/help/uniref\">UniRef100</a> database downloaded March 6, 2018), and <a href=\"http://tigrfams.jcvi.org/cgi-bin/index.cgi\">TIGRFAM</a>&nbsp;(v15) annotations for the representative genomes in <a href=\"http://gtdb.ecogenomic.org/\">GTDB</a> release 03-RS86.</p>\n\n<p>Please refer to <a href=\"http://annotree.uwaterloo.ca\">http://annotree.uwaterloo.ca</a> for the full site.</p>\n\n<p>&nbsp;</p>\n\n<p><strong>Older versions:</strong><br>\n2018-10-22: MySQL dump file (v5.7)&nbsp;containing the &#39;gtdb_bacteria&#39; database for GTDB release 02-RS83 for use with AnnoTree. Functional annotations include <a href=\"https://pfam.xfam.org/\">Pfam</a>&nbsp;(v27) and&nbsp;<a href=\"https://www.genome.jp/kegg/\">KEGG</a> Ontology (from the <a href=\"https://www.uniprot.org/help/uniref\">UniRef100</a> database downloaded March 6, 2018). Corresponds to AnnoTree version 1.0.0 before the integration of Archaea.</p>", 
  "author": [
    {
      "family": "Mendler, Kerrin"
    }, 
    {
      "family": "Doxey, Andrew"
    }, 
    {
      "family": "Chen, Han"
    }
  ], 
  "id": "2555457", 
  "issued": {
    "date-parts": [
      [
        2018, 
        10, 
        22
      ]
    ]
  }, 
  "publisher": "Zenodo", 
  "title": "AnnoTree: Functionally Annotated Tree of Life", 
  "type": "dataset", 
  "version": "1.1.0"
}
322
65
views
downloads
All versions This version
Views 322247
Downloads 6535
Data volume 1.3 TB735.4 GB
Unique views 253209
Unique downloads 5125

Share

Cite as