August 15, 2018 Lesson Open Access

Mehmet Tekman

JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/celseq_barcodes.192.tabular"
      }, 
      "checksum": "md5:b7d517de7df1f26170e8322783657fc4", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "celseq_barcodes.192.tabular", 
      "type": "tabular", 
      "size": 1344
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/Mus_musculus.GRCm38.93.mm10.UCSC.ncbiRefSeq.gtf"
      }, 
      "checksum": "md5:f70b5a1f8985d1d150538987bbf6b1fc", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "Mus_musculus.GRCm38.93.mm10.UCSC.ncbiRefSeq.gtf", 
      "type": "gtf", 
      "size": 264668243
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/P1_B1.tabular"
      }, 
      "checksum": "md5:8b57e74c0e17da35bc9fc7a16bdb3ed3", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "P1_B1.tabular", 
      "type": "tabular", 
      "size": 1064613
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/P1_B2.tabular"
      }, 
      "checksum": "md5:26a6cb201287104660ac3775b6544f8c", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "P1_B2.tabular", 
      "type": "tabular", 
      "size": 1009137
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/P2_B3.tabular"
      }, 
      "checksum": "md5:a46c5da6449d6ab687897e91fb568846", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "P2_B3.tabular", 
      "type": "tabular", 
      "size": 999182
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/P2_B4.tabular"
      }, 
      "checksum": "md5:6cb933303c03684fd53ef88256e7c81c", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "P2_B4.tabular", 
      "type": "tabular", 
      "size": 1090250
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/SRR5683689_1.fastq.gz"
      }, 
      "checksum": "md5:09b7efb0fb38fa1fdcc9d397e06032ce", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "SRR5683689_1.fastq.gz", 
      "type": "gz", 
      "size": 239104517
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/SRR5683689_2.fastq.gz"
      }, 
      "checksum": "md5:aae3e3f24fcf2be55374320a6cdb9990", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "SRR5683689_2.fastq.gz", 
      "type": "gz", 
      "size": 686626827
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/test_barcodes_celseq2_R1.fastq.gz"
      }, 
      "checksum": "md5:ff5d1e54b8f023add7692fb1c003677f", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "test_barcodes_celseq2_R1.fastq.gz", 
      "type": "gz", 
      "size": 243715059
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e/test_barcodes_celseq2_R2.fastq.gz"
      }, 
      "checksum": "md5:ad4de0982d62f73cc281153bd0d95271", 
      "bucket": "26820e77-366b-4944-9e74-65d7c2aea54e", 
      "key": "test_barcodes_celseq2_R2.fastq.gz", 
      "type": "gz", 
      "size": 594894005
    }
  ], 
  "owners": [
    50991
  ], 
  "doi": "10.5281/zenodo.2554612", 
  "stats": {
    "version_unique_downloads": 1079.0, 
    "unique_views": 56.0, 
    "views": 63.0, 
    "version_views": 7093.0, 
    "unique_downloads": 20.0, 
    "version_unique_views": 6740.0, 
    "volume": 19544292420.0, 
    "version_downloads": 3040.0, 
    "downloads": 75.0, 
    "version_volume": 236778271476.0
  }, 
  "links": {
    "doi": "https://doi.org/10.5281/zenodo.2554612", 
    "conceptdoi": "https://doi.org/10.5281/zenodo.1345634", 
    "bucket": "https://zenodo.org/api/files/26820e77-366b-4944-9e74-65d7c2aea54e", 
    "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.1345634.svg", 
    "html": "https://zenodo.org/record/2554612", 
    "latest_html": "https://zenodo.org/record/3253142", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.2554612.svg", 
    "latest": "https://zenodo.org/api/records/3253142"
  }, 
  "conceptdoi": "10.5281/zenodo.1345634", 
  "created": "2019-02-01T01:35:38.256712+00:00", 
  "updated": "2019-06-23T17:55:23.576851+00:00", 
  "conceptrecid": "1345634", 
  "revision": 5, 
  "id": 2554612, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.2554612", 
    "description": "<p>The data provided here is part of the Galaxy Training Network tutorial that analyses single-cell RNA-seq data (scRNA) using cell barcodes and data from Freiburg MPI Gr&uuml;n Lab. This dataset (GEO Accession: <strong>GSM2668223</strong>) consists of paired-end data from the bone marrow of a 5-week old male C57 mouse, downsampled to facilitate ease-of-processing during live demonstration.</p>\n\n<p>&nbsp;</p>\n\n<p>Test data for understanding cell and UMI barcoding is also provided for demonstration purposes.</p>\n\n<p>&nbsp;</p>\n\n<p>The Plate/Batch datasets were generated from scripts.</p>", 
    "language": "eng", 
    "title": "Training material for single-cell RNA-seq data analysis (Galaxy Training Network tutorial)", 
    "license": {
      "id": "CC-BY-SA-4.0"
    }, 
    "relations": {
      "version": [
        {
          "count": 5, 
          "index": 1, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "1345634"
          }, 
          "is_last": false, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "3253142"
          }
        }
      ]
    }, 
    "communities": [
      {
        "id": "galaxy-training"
      }
    ], 
    "version": "v0.3", 
    "keywords": [
      "single-cell RNA-seq", 
      "scRNA", 
      "Mus Musculus", 
      "Training Data", 
      "mm10", 
      "celseq2"
    ], 
    "publication_date": "2018-08-15", 
    "creators": [
      {
        "affiliation": "Albert-Ludwigs-Universit\u00e4t Freiburg", 
        "name": "Mehmet Tekman"
      }
    ], 
    "access_right": "open", 
    "resource_type": {
      "type": "lesson", 
      "title": "Lesson"
    }, 
    "related_identifiers": [
      {
        "scheme": "doi", 
        "identifier": "10.5281/zenodo.1345634", 
        "relation": "isVersionOf"
      }
    ]
  }
}