Preview

CoordinateCleaner-v2.0-4.zip

ropensci-CoordinateCleaner-3a3f294
- .Rbuildignore 762 Bytes
- .gitignore 208 Bytes
- .travis.yml 472 Bytes
- CONTRIBUTING.md 387 Bytes
- CRAN-RELEASE 129 Bytes
- CoordinateCleaner.Rproj 303 Bytes
- DESCRIPTION 2.7 kB
- NAMESPACE 2.2 kB
- NEWS.md 2.4 kB
- R
  - CleanCoordinates.R 3.6 kB
  - CleanCoordinatesDS.R 1.7 kB
  - CleanCoordinatesFOS.R 3.2 kB
  - CoordinateCleaner-package.R 5.8 kB
  - cc_cap.R 6.4 kB
  - cc_cen.R 5.3 kB
  - cc_coun.R 3.2 kB
  - cc_dupl.R 2.2 kB
  - cc_equ.R 1.7 kB
  - cc_gbif.R 4.2 kB
  - cc_inst.R 7.1 kB
  - cc_iucn.R 4.8 kB
  - cc_outl.R 11.0 kB
  - cc_sea.R 5.0 kB
  - cc_urb.R 3.6 kB
  - cc_val.R 1.7 kB
  - cc_zero.R 2.0 kB
  - cd_ddmm.R 7.5 kB
  - cd_round.R 13.9 kB
  - cf_age.R 10.6 kB
  - cf_equal.R 1.5 kB
  - cf_outl.R 10.9 kB
  - cf_range.R 6.7 kB
  - clean_coordinates.R 16.2 kB
  - clean_dataset.R 8.2 kB
  - clean_fossils.R 12.1 kB
  - internal_clean_coordinate.R 718 Bytes
  - internal_clean_dataset.R 5.5 kB
  - internal_write_pyrate.R 233 Bytes
  - methods.spatialvalid.R 6.6 kB
  - write_pyrate.R 9.1 kB
- README.md 4.9 kB
- _pkgdown.yml 305 Bytes
- codemeta.json 10.7 kB
- cran-comments.md 97 Bytes
- data
  - buffland.rda 488.7 kB
  - countryref.rda 120.6 kB
  - institutions.rda 339.6 kB
  - pbdb_example.rda 69.8 kB
- docs
  - CONTRIBUTING.html 6.3 kB
  - articles
    - Background_comparison_other_software.html 11.3 kB
    - Background_dataset_level_cleaning.html 26.0 kB
    - Background_dataset_level_cleaning_files
      - figure-html
        
        fig10-1.png 39.8 kB
        
        fig5-1.png 35.0 kB
        
        fig7-1.png 40.1 kB
        
        fig8-1.png 46.3 kB
        
        unnamed-chunk-2-1.png 24.6 kB
        
        unnamed-chunk-3-1.png 26.3 kB
        
        unnamed-chunk-4-1.png 46.0 kB
        
        unnamed-chunk-5-1.png 40.2 kB
    - Background_the_institutions_database.html 15.4 kB
    - Background_the_institutions_database_files
      - figure-html
        
        fig1-1.png 14.9 kB
        
        fig2-1.png 37.8 kB
        
        fig3-1.png 19.0 kB
        
        fig4-1.png 13.4 kB
    - Cleaning_GBIF_data_with_CoordinateCleaner.html 51.5 kB
    - Cleaning_GBIF_data_with_CoordinateCleaner_files
      - figure-html
        
        unnamed-chunk-13-1.png 25.0 kB
        
        unnamed-chunk-14-1.png 61.6 kB
        
        unnamed-chunk-15-1.png 17.0 kB
        
        unnamed-chunk-16-1.png 23.5 kB
        
        unnamed-chunk-4-1.png 22.5 kB
        
        unnamed-chunk-5-1.png 24.1 kB
        
        unnamed-chunk-8-1.png 12.8 kB
    - Cleaning_PBDB_fossils_with_CoordinateCleaner.html 42.8 kB
    - Cleaning_PBDB_fossils_with_CoordinateCleaner_files
      - figure-html
        
        unnamed-chunk-15-1.png 9.1 kB
        
        unnamed-chunk-16-1.png 9.2 kB
        
        unnamed-chunk-17-1.png 9.8 kB
        
        unnamed-chunk-24-1.png 15.6 kB
        
        unnamed-chunk-24-2.png 14.8 kB
        
        unnamed-chunk-25-1.png 15.6 kB
        
        unnamed-chunk-25-2.png 14.8 kB
        
        unnamed-chunk-26-1.png 21.0 kB
        
        unnamed-chunk-26-2.png 20.8 kB
        
        unnamed-chunk-27-1.png 21.0 kB
        
        unnamed-chunk-27-2.png 20.9 kB
        
        unnamed-chunk-6-1.png 21.5 kB
        
        unnamed-chunk-7-1.png 21.5 kB
    - Quickstart_Flagging_problematic_coordinates_in_a_nutshell.html 24.1 kB
    - Quickstart_clean_coordinates.html 49.9 kB
    - Quickstart_clean_fossils.html 9.1 kB
    - Quickstart_how_to_run.html 13.9 kB
    - Quickstart_how_to_run_files
      - figure-html
        
        unnamed-chunk-1-1.png 17.6 kB
        
        unnamed-chunk-1-2.png 17.0 kB
        
        unnamed-chunk-1-3.png 31.9 kB
        
        unnamed-chunk-1-4.png 12.1 kB
        
        unnamed-chunk-1-5.png 36.1 kB
        
        unnamed-chunk-2-1.png 13.5 kB
        
        unnamed-chunk-2-2.png 25.1 kB
        
        unnamed-chunk-2-3.png 12.1 kB
        
        unnamed-chunk-2-4.png 24.4 kB
    - Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.html 59.1 kB
    - Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner_files
      - figure-html
        
        unnamed-chunk-13-1.png 25.0 kB
        
        unnamed-chunk-14-1.png 25.2 kB
        
        unnamed-chunk-15-1.png 62.4 kB
        
        unnamed-chunk-16-1.png 25.3 kB
        
        unnamed-chunk-17-1.png 32.6 kB
        
        unnamed-chunk-4-1.png 23.6 kB
        
        unnamed-chunk-5-1.png 23.0 kB
        
        unnamed-chunk-8-1.png 12.9 kB
        
        unnamed-chunk-9-1.png 14.1 kB
    - Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.html 46.9 kB
    - Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner_files
      - figure-html
        
        unnamed-chunk-16-1.png 10.2 kB
        
        unnamed-chunk-17-1.png 10.9 kB
        
        unnamed-chunk-25-1.png 16.3 kB
        
        unnamed-chunk-25-2.png 15.5 kB
        
        unnamed-chunk-27-1.png 24.3 kB
        
        unnamed-chunk-27-2.png 24.1 kB
        
        unnamed-chunk-7-1.png 22.5 kB
    - Tutorial_Using_custom_gazetteers.html 14.0 kB
    - Tutorial_Using_custom_gazetteers_files
      - figure-html
        
        unnamed-chunk-1-1.png 34.1 kB
        
        unnamed-chunk-2-1.png 19.0 kB
        
        unnamed-chunk-2-2.png 33.7 kB
    - Tutorial_geographic_outliers.html 41.2 kB
    - Tutorial_geographic_outliers_files
      - figure-html
        
        unnamed-chunk-10-1.png 34.2 kB
        
        unnamed-chunk-3-1.png 33.6 kB
        
        unnamed-chunk-4-1.png 33.6 kB
        
        unnamed-chunk-5-1.png 33.6 kB
        
        unnamed-chunk-7-1.png 33.4 kB
        
        unnamed-chunk-8-1.png 33.4 kB
        
        unnamed-chunk-9-1.png 34.4 kB
    - comparison_other_software.html 10.7 kB
    - index.html 6.8 kB
    - inst
      - webpage_screenshot.png 992.9 kB
    - qs_clean_coordinates.html 49.6 kB
    - qs_clean_dataset.html 13.9 kB
    - qs_clean_dataset_files
      - figure-html
        
        unnamed-chunk-1-1.png 13.2 kB
        
        unnamed-chunk-1-10.png 18.8 kB
        
        unnamed-chunk-1-2.png 31.4 kB
        
        unnamed-chunk-1-3.png 12.1 kB
        
        unnamed-chunk-1-4.png 32.8 kB
        
        unnamed-chunk-1-5.png 10.8 kB
        
        unnamed-chunk-1-6.png 16.8 kB
        
        unnamed-chunk-1-7.png 12.0 kB
        
        unnamed-chunk-1-8.png 16.3 kB
        
        unnamed-chunk-1-9.png 17.5 kB
    - qs_clean_fossils.html 9.8 kB
    - qs_how_to_run.html 13.6 kB
    - qs_how_to_run_files
      - figure-html
        
        unnamed-chunk-1-1.png 17.2 kB
        
        unnamed-chunk-1-2.png 18.5 kB
        
        unnamed-chunk-1-3.png 36.0 kB
        
        unnamed-chunk-1-4.png 47.9 kB
        
        unnamed-chunk-1-5.png 34.1 kB
        
        unnamed-chunk-2-1.png 15.6 kB
        
        unnamed-chunk-2-2.png 24.0 kB
        
        unnamed-chunk-2-3.png 12.1 kB
        
        unnamed-chunk-2-4.png 26.4 kB
    - t_geographic_outliers.html 27.0 kB
    - t_geographic_outliers_files
      - figure-html
        
        unnamed-chunk-2-1.png 32.9 kB
        
        unnamed-chunk-3-1.png 32.9 kB
        
        unnamed-chunk-4-1.png 33.0 kB
        
        unnamed-chunk-5-1.png 33.7 kB
  - authors.html 7.3 kB
  - docsearch.css 11.8 kB
  - docsearch.js 2.0 kB
  - index.html 14.0 kB
  - index_files
    - figure-html
      - unnamed-chunk-3-1.png 17.5 kB
      - unnamed-chunk-3-2.png 14.8 kB
      - unnamed-chunk-3-3.png 35.8 kB
      - unnamed-chunk-3-4.png 51.4 kB
      - unnamed-chunk-3-5.png 36.7 kB
  - link.svg 810 Bytes
  - news
    - index.html 12.1 kB
  - pkgdown.css 4.1 kB
  - pkgdown.js 3.4 kB
  - pkgdown.yml 846 Bytes
  - reference
    - CoordinateCleaner-package.html 7.4 kB
    - Coordinatecleaner-deprecated.html 7.2 kB
    - buffland.html 7.2 kB
    - cc_cap.html 19.2 kB
    - cc_cen.html 13.4 kB
    - cc_coun.html 12.0 kB
    - cc_dupl.html 23.8 kB
    - cc_equ.html 17.1 kB
    - cc_gbif.html 12.4 kB
    - cc_inst.html 15.4 kB
    - cc_iucn.html 17.0 kB
    - cc_outl.html 23.0 kB
    - cc_sea.html 12.9 kB
    - cc_urb.html 11.4 kB
    - cc_val.html 17.8 kB
    - cc_zero.html 11.6 kB
    - cd_ddmm.html 17.1 kB
    - cd_round-1.png 10.2 kB
    - cd_round-2.png 18.4 kB
    - cd_round-3.png 10.1 kB
    - cd_round-4.png 15.9 kB
    - cd_round-5.png 15.6 kB
    - cd_round.html 16.3 kB
    - cf_age.html 18.2 kB
    - cf_equal.html 11.2 kB
    - cf_outl.html 17.0 kB
    - cf_range.html 14.9 kB
    - clean_coordinates.html 23.4 kB
    - clean_dataset.html 19.3 kB
    - clean_fossils.html 23.3 kB
    - countryref.html 9.8 kB
    - index.html 11.5 kB
    - institutions.html 11.1 kB
    - landmass.html 6.5 kB
    - pbdb_example.html 11.0 kB
    - plot.spatialvalid-1.png 17.7 kB
    - plot.spatialvalid.html 11.9 kB
    - write_pyrate.html 15.6 kB
- man
  - CoordinateCleaner-package.Rd 1.4 kB
  - Coordinatecleaner-deprecated.Rd 858 Bytes
  - buffland.Rd 602 Bytes
  - cc_cap.Rd 3.1 kB
  - cc_cen.Rd 3.4 kB
  - cc_coun.Rd 2.7 kB
  - cc_dupl.Rd 2.7 kB
  - cc_equ.Rd 2.1 kB
  - cc_gbif.Rd 2.6 kB
  - cc_inst.Rd 3.7 kB
  - cc_iucn.Rd 3.1 kB
  - cc_outl.Rd 4.8 kB
  - cc_sea.Rd 3.1 kB
  - cc_urb.Rd 2.3 kB
  - cc_val.Rd 2.1 kB
  - cc_zero.Rd 2.2 kB
  - cd_ddmm.Rd 4.2 kB
  - cd_round.Rd 4.1 kB
  - cf_age.Rd 4.4 kB
  - cf_equal.Rd 1.7 kB
  - cf_outl.Rd 4.7 kB
  - cf_range.Rd 3.3 kB
  - clean_coordinates.Rd 9.8 kB
  - clean_dataset.Rd 5.2 kB
  - clean_fossils.Rd 8.1 kB
  - countryref.Rd 1.6 kB
  - institutions.Rd 953 Bytes
  - pbdb_example.Rd 908 Bytes
  - plot.spatialvalid.Rd 1.9 kB
  - write_pyrate.Rd 3.8 kB
- tests
  - testthat
    - Test_fossillevel_cleaning.R 4.5 kB
    - test_coordinatelevel_functions.R 8.7 kB
    - test_datasetlevel_functions.R 3.3 kB
    - test_wrapper_functions.R 3.5 kB
  - testthat.R 78 Bytes
- vignettes
  - Background_comparison_other_software.Rmd 6.6 kB
  - Background_dataset_level_cleaning.Rmd 28.7 kB
  - Background_the_institutions_database.Rmd 13.5 kB
  - CoordinateCleaner.bib 39.7 kB
  - Quickstart_Flagging_problematic_coordinates_in_a_nutshell.Rmd 6.9 kB
  - Quickstart_clean_fossils.Rmd 1.3 kB
  - Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd 29.1 kB
  - Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd 18.4 kB
  - Tutorial_Using_custom_gazetteers.Rmd 3.6 kB
  - Tutorial_geographic_outliers.Rmd 16.9 kB
  - apa.csl 11.4 kB
  - inst
    - 0005313-180730143533302.csv 96.7 MB
    - 0006556-180730143533302.csv 11.6 MB
    - METADATA for Digital Distribution Maps of The IUCN Red List of Threatened Species.pdf 437.8 kB
    - ReadMe.txt 492 Bytes
    - Red List Terms & Conditions of Use.pdf 46.9 kB
    - analyses_matrix_Clean 2.2 kB
    - analyses_matrix_Error_fraction_0.2 2.2 kB
    - analyses_matrix_Error_fraction_0.5 2.2 kB
    - analyses_matrix_Error_fraction_1 1.4 kB
    - autocorrelation_simulations.Rds 6.0 MB
    - simulations_cd_ddmm.Rds 5.5 MB
    - species_20025.cpg 5 Bytes
    - species_20025.dbf 8.3 kB
    - species_20025.lyr 76.3 kB
    - species_20025.prj 145 Bytes
    - species_20025.sbn 164 Bytes
    - species_20025.sbx 124 Bytes
    - species_20025.shp 2.3 MB
    - species_20025.shp.xml 10.3 kB
    - species_20025.shx 116 Bytes
    - species_20025.zip 2.3 MB
    - webpage_screenshot.png 992.9 kB