There is a newer version of this record available.

Dataset Open Access

Update of the Xylella spp. host plant database

European Food Safety Authority


DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.2536025">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.2536025</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.2536025"/>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>European Food Safety Authority</foaf:name>
      </rdf:Description>
    </dct:creator>
    <dct:title>Update of the Xylella spp. host plant database</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2019</dct:issued>
    <dcat:keyword>data extraction</dcat:keyword>
    <dcat:keyword>data collection</dcat:keyword>
    <dcat:keyword>literature review</dcat:keyword>
    <dcat:keyword>host plants database</dcat:keyword>
    <dcat:keyword>Multilocus sequence type</dcat:keyword>
    <dcat:keyword>Xylella spp.</dcat:keyword>
    <dcat:keyword>Xylella fastidiosa</dcat:keyword>
    <dcat:keyword>Xylella taiwanensis</dcat:keyword>
    <dct:subject rdf:resource="http://id.agrisemantics.org/gacs/C20262"/>
    <dct:subject rdf:resource="http://id.agrisemantics.org/gacs/C20265"/>
    <dct:subject rdf:resource="http://id.agrisemantics.org/gacs/C2724"/>
    <dct:subject rdf:resource="http://id.agrisemantics.org/gacs/C5999"/>
    <dct:subject rdf:resource="http://id.agrisemantics.org/gacs/C1029"/>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2019-01-09</dct:issued>
    <dct:language rdf:resource="http://publications.europa.eu/resource/authority/language/ENG"/>
    <owl:sameAs rdf:resource="https://zenodo.org/record/2536025"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/2536025</skos:notation>
        <adms:schemeAgency>url</adms:schemeAgency>
      </adms:Identifier>
    </adms:identifier>
    <dct:hasPart rdf:resource="https://doi.org/10.2903/j.efsa.2018.5408"/>
    <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.1339343"/>
    <dct:isPartOf rdf:resource="https://zenodo.org/communities/efsa-kj"/>
    <owl:versionInfo>2</owl:versionInfo>
    <dct:description>&lt;p&gt;Following a request from the European Commission, EFSA periodically updates the database on the host plants of &lt;em&gt;Xylella &lt;/em&gt;&lt;em&gt;spp.&lt;/em&gt; While previous editions of the database (2015 and 2016) dealt with the species &lt;em&gt;X.&amp;nbsp;fastidiosa &lt;/em&gt;only, the new updated database and the related scientific report (EFSA (European Food Safety Authority), 2018. Scientific report on the update of the &lt;em&gt;Xylella&lt;/em&gt; spp. host plant database. EFSA Journal 2018;16(9):5408, 87 pp. https://doi.org/10.2903/j.efsa.2018.5408) addresses the whole genus &lt;em&gt;Xylella&lt;/em&gt;, including therefore both species &lt;em&gt;X. fastidiosa &lt;/em&gt;and &lt;em&gt;X.&amp;nbsp;taiwanensis&lt;/em&gt;.&lt;/p&gt; &lt;p&gt;The information on host plants of &lt;em&gt;Xylella&lt;/em&gt; spp. was retrieved from scientific literature up to November 2017 and from Europhyt notifications up to May 2018. The applied protocol for the extensive literature review, data collection and reporting are described in detail in the scientific report.&lt;/p&gt; &lt;p&gt;The current database includes 561 plant species reported infected by &lt;em&gt;Xylella &lt;/em&gt;spp., of which for 312 plant species the infection was determined with at least two different detection methods. These species cover 264 genera in 82 botanical families (152 genera in 61 botanical families when considering only records with at least two different detection methods). Information on tolerant and resistant response of plant varieties to &lt;em&gt;Xylell&lt;/em&gt;a spp. is also included.&lt;/p&gt; &lt;p&gt;This updated database of &lt;em&gt;Xylella&lt;/em&gt; spp. host plants wishes to provide a key tool for risk management, risk assessment and scientific research on this polyphagous bacterial plant pathogen.&lt;/p&gt; &lt;p&gt;The Excel File contains several sheets: the LEGENDA (with extensive description of each table), the full detailed raw data of the &lt;em&gt;Xylella&lt;/em&gt; spp. host plant database (sheet &amp;ldquo;observation&amp;rdquo;), the list of host plant species, genera and families (sheet &amp;ldquo;host_species_evaluated&amp;rdquo;, &amp;ldquo;host_genus_evaluated&amp;rdquo; and &amp;ldquo;host_family_evaluated&amp;rdquo;), and examples of data extraction (tables 7 to 14, figure 6, Appendices A to D) that are included in the scientific report.&lt;/p&gt; &lt;p&gt;This Version 2, published on 9 January 2019, contains some corrected data compared to the previous version of the Excel file. Geographical coordinates of some records have been adjusted and one additional record belonging to RefID1787 has been added. Moreover, two plant species (&lt;em&gt;Coffea&amp;nbsp;liberica&lt;/em&gt;&amp;nbsp;var.&amp;nbsp;&lt;em&gt;dewevrei&lt;/em&gt; and &lt;em&gt;Coffea arabica&lt;/em&gt; x &lt;em&gt;C. liberica&lt;/em&gt;&amp;nbsp;var.&amp;nbsp;&lt;em&gt;dewevrei&lt;/em&gt;) were erroneously registered twice in the controlled terminology (and consequently double counted in the previous Excel file). &amp;nbsp;&lt;/p&gt; &lt;p&gt;&lt;em&gt;Bibliography:&lt;/em&gt;&lt;/p&gt; &lt;p&gt;EFSA (European Food Safety Authority), 2018. Scientific report on the update of the &lt;em&gt;Xylella&lt;/em&gt; spp. host plant database. EFSA Journal 2018;16(9):5408, 87 pp. https://doi.org/10.2903/j.efsa.2018.5408&lt;/p&gt;</dct:description>
    <dct:description>alpha@efsa.europa.eu</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:license rdf:resource="https://creativecommons.org/licenses/by/4.0/legalcode"/>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.2536025"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL>https://doi.org/10.5281/zenodo.2536025</dcat:accessURL>
        <dcat:byteSize>2602730</dcat:byteSize>
        <dcat:downloadURL>https://zenodo.org/record/2536025/files/Xylella spp host plants database.xlsx</dcat:downloadURL>
        <dcat:mediaType>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
</rdf:RDF>
3,323
994
views
downloads
All versions This version
Views 3,3231,639
Downloads 994452
Data volume 2.3 GB1.2 GB
Unique views 2,7721,476
Unique downloads 659263

Share

Cite as