December 12, 2018 Software Open Access

Luke Chang; Eshin Jolly; Jin Hyun Cheong; Anton Burnashev; Andy Chen

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    <subfield code="a">&lt;p&gt;&lt;em&gt;New Functionality&lt;/em&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;Can now perform multi-region and/or searchlight based prediction using &lt;code&gt;Brain_Data.predict_multi&lt;/code&gt;&lt;/li&gt;
	&lt;li&gt;&lt;code&gt;Brain_Data.predict&lt;/code&gt; now support multi-class classification&lt;/li&gt;
	&lt;li&gt;New interactive plotting based on &lt;code&gt;nilearn&lt;/code&gt; using &lt;code&gt;Brain_Data.iplot()&lt;/code&gt;&lt;/li&gt;
	&lt;li&gt;plotting functions have been renamed to remove camel case (e.g. &lt;code&gt;plotBrain&lt;/code&gt; -&amp;gt; &lt;code&gt;plot_brain&lt;/code&gt;)&lt;/li&gt;
	&lt;li&gt;&lt;code&gt;Brain_Data.plot&lt;/code&gt; now integrates old plotting functions in method call using argument &lt;code&gt;view&lt;/code&gt;. Still defaults to axial slices but can optionally display, &lt;code&gt;glass&lt;/code&gt;, &lt;code&gt;mni&lt;/code&gt; (for ortho slices) or &lt;code&gt;both&lt;/code&gt;&lt;/li&gt;
	&lt;li&gt;new &lt;code&gt;distance_correlation&lt;/code&gt;, &lt;code&gt;procrustes_distance&lt;/code&gt;, &lt;code&gt;jackknife_permutation&lt;/code&gt; functions in &lt;code&gt;nltools.stats&lt;/code&gt;&lt;/li&gt;
	&lt;li&gt;&lt;code&gt;expand_mask&lt;/code&gt;, &lt;code&gt;collapse_mask&lt;/code&gt;, &lt;code&gt;create_sphere&lt;/code&gt; can now take custom masks&lt;/li&gt;
	&lt;li&gt;&lt;code&gt;Brain_Data.standarize&lt;/code&gt; gains new axis argument&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&lt;em&gt;Bug Fixes&lt;/em&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;Fixed issue in boolean indexing with ROC forced choice computation&lt;/li&gt;
	&lt;li&gt;Fixed edge case bug in &lt;code&gt;fdr&lt;/code&gt;&lt;/li&gt;
	&lt;li&gt;&lt;code&gt;holm_bonf&lt;/code&gt; behaves like &lt;code&gt;fdr&lt;/code&gt; now and fixes incorrect pvalue bug&lt;/li&gt;
	&lt;li&gt;&lt;code&gt;check_numpy_square_matrix&lt;/code&gt; validates properly now&lt;/li&gt;
	&lt;li&gt;fixed issue in failed arma regression if &lt;code&gt;statsmodels&lt;/code&gt; was not installed&lt;/li&gt;
	&lt;li&gt;fixed issue in failed interactive plotting if &lt;code&gt;ipywidgets&lt;/code&gt; was not installed&lt;/li&gt;
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