Software Open Access

Agent-based pathogen kinetics model

Alexander Gutfraind; Basmattee Boodram; Harel Dahari; Marian Major


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    <subfield code="a">&lt;p&gt;People who inject drugs (PWID) are at high risk for blood-borne pathogens transmitted during the sharing of contaminated injection equipment, particularly hepatitis C virus (HCV). To adequately address this complexity in HCV epidemic forecasting, we have developed a computational model, the Agent-based Pathogen Kinetics model (APK). APK simulates the PWID population in metropolitan Chicago, including the social interactions that result in HCV infection. See accompanying publication for details.&lt;/p&gt;

&lt;p&gt;&lt;br /&gt;
This file provides an installer for APK software and requires Java 7 environment. It could be run from the command line using &amp;quot;java -jar&amp;nbsp;apk_setup_2015-01-09.jar&amp;quot;. Source code, demo population files and documentation is available after the installation in the installation directory.&amp;nbsp;&lt;/p&gt;</subfield>
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