Software Open Access

gene-ontology: Initial zenodo release

Daniel Himmelstein; Casey Greene; Venkat Malladi; Frederic Bastian; Sergio Baranzini


DataCite XML Export

<?xml version='1.0' encoding='utf-8'?>
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
  <identifier identifierType="DOI">10.5281/zenodo.21711</identifier>
  <creators>
    <creator>
      <creatorName>Daniel Himmelstein</creatorName>
    </creator>
    <creator>
      <creatorName>Casey Greene</creatorName>
    </creator>
    <creator>
      <creatorName>Venkat Malladi</creatorName>
    </creator>
    <creator>
      <creatorName>Frederic Bastian</creatorName>
    </creator>
    <creator>
      <creatorName>Sergio Baranzini</creatorName>
    </creator>
  </creators>
  <titles>
    <title>gene-ontology: Initial zenodo release</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2015</publicationYear>
  <subjects>
    <subject>Gene Ontology</subject>
    <subject>Annotations</subject>
    <subject>Ontologies</subject>
    <subject>Propagation</subject>
    <subject>Rephetio</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2015-07-28</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/21711</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/dhimmel/gene-ontology/tree/v1.0</relatedIdentifier>
  </relatedIdentifiers>
  <version>v1.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This project provides easy-to-use Gene Ontology annotations. Annotations relate GO Terms with Entrez Genes. We provide genes as Entrez GeneIDs and as symbols.&lt;/p&gt;

&lt;p&gt;Users choose from the following options:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;species: which species to retrieve annotations for&lt;/li&gt;
	&lt;li&gt;evidence: whether to use all annotations or annotations from experimental evidence only&lt;/li&gt;
	&lt;li&gt;propagation: whether to include only direct annotations or infer annotations based on ontology structure&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;The project includes a website for browsing and downloading annotation files.&lt;/p&gt;</description>
  </descriptions>
</resource>
548
13
views
downloads
All versions This version
Views 548548
Downloads 1313
Data volume 1.4 GB1.4 GB
Unique views 537537
Unique downloads 1313

Share

Cite as