10.5281/zenodo.208214
https://zenodo.org/records/208214
oai:zenodo.org:208214
Lobet, Guillaume
Guillaume
Lobet
Forschungszentrum Jülich, Université catholique de Louvain
Koevoets, Iko
Iko
Koevoets
University of Amsterdam
Noll, Manuel
Manuel
Noll
University of Liège
Tocquin, Pierre
Pierre
Tocquin
University of Liège
Meyer, Patrick E
Patrick E
Meyer
University of Liège
Pagès, Loic
Loic
Pagès
INRA Avignon
Périlleux, Claire
Claire
Périlleux
University of Liège
Library of simulated root images, with different noise levels
Zenodo
2016
rsml
root model
open science
validation
2016-12-18
Creative Commons Attribution 4.0 International
This depository contains the images and associated RSML files used in the paper entitled "Using a structural root system model to evaluate and improve the accuracy of root image analysis pipelines" from the same authors.
It contains:
- 30.000 simulated root images of 10.000 different root systems, with different noise levels (0=null, 1=medium, 3=high);
- 10.000 corresponding RSML files;
- .csv files containing the ground-truth data for each modelled root system (500-data.csv);
- .csv files containing the image descriptors extracted using RIA-J (500-descriptors.csv);
The codes used to generate and analyse this dataset is available here: http://doi.org/10.5281/zenodo.208499
Note about the metrics computed from the RSML files (contained in 500-data.csv): the root systems were simulated in a constrained 2D space (rhizotron-like). Therefore, the RSML_reader plugin computed the lengths of the different roots in 2D only (despite the fact that a Z coordinate is present in the the RSML files).
CORRECTION: There is a scale issue in the 500-descriptors.csv file. "area" and "convexhull" columns values should be divided by 10