GMOD/Apollo: Release Candidate 4 - Apollo2.0.5-RC4(JB-#9334e76fd)

Release Candidate 4 - Apollo 2.0.5 (still testing)

Some of the new features include:

• Numerous UI and performance improvements, including easier navigation between annotated elements via the Annotator Panel.
• Better server and client-side reporting.
• Upgrade to Java 8 / GWT 2.8, and updated JBrowse (use ./apollo clean-all or install from an formal release download)
• It is now possible to also include metadata on import.

Some important bug fixes:

• Import script were logging preferences unnecessarily.
• Improved security for non-public genomes.
• Fixed for going between logged-out mode and the Annotator Panel while retaining history.
• Improved display of sequence over the annotation after moving the annotation to the opposite strand.
• Users will see a warning when it is not possible to create an intron with canonical splice sites in the selected region.

The complete change log can be found at: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md

Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/

Note: You can find a guide upgrading existing Apollo installations here: http://genomearchitect.readthedocs.io/en/stable/Migration.html

Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/

Active mailing list apollo@lists.lbl.gov