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GMOD/Apollo: Release Candidate 4 - Apollo2.0.5-RC4(JB-#9334e76fd)

Nathan Dunn; Colin Diesh; Deepak; S2KFan; GreggHelt2; Robert Buels; Monica Munoz-Torres; Eric Rasche; Stephen Ficklin; Justin Reese; NehaVC; Jun-Wei Lin; childers; The Gitter Badger; Kim Rutherford; Aymeric Naômé

Release Candidate 4 - Apollo 2.0.5 (still testing)

Some of the new features include:

  • Numerous UI and performance improvements, including easier navigation between annotated elements via the Annotator Panel.
  • Better server and client-side reporting.
  • Upgrade to Java 8 / GWT 2.8, and updated JBrowse (use ./apollo clean-all or install from an formal release download)
  • It is now possible to also include metadata on import.

Some important bug fixes:

  • Import script were logging preferences unnecessarily.
  • Improved security for non-public genomes.
  • Fixed for going between logged-out mode and the Annotator Panel while retaining history.
  • Improved display of sequence over the annotation after moving the annotation to the opposite strand.
  • Users will see a warning when it is not possible to create an intron with canonical splice sites in the selected region.

The complete change log can be found at: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md

Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/

Note: You can find a guide upgrading existing Apollo installations here: http://genomearchitect.readthedocs.io/en/stable/Migration.html

Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/

Active mailing list apollo@lists.lbl.gov

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