R/PCMTree.R
PCMTreeSetDefaultRegime.Rd
This function sets or overwrites the current member edge.regime in tree with one of the following:
rep(regime[1], length(tree$edge.length))if regime is a character or an integer
rep(PCMRegimes(regime)[1], length(tree$edge.length))if regime is a PCM model
Note that the function modifies the passed tree object inplace.
PCMTreeSetDefaultRegime(tree, regime)
tree | a phylo object |
---|---|
regime | a character, an integer or PCM model object |
This function does not return a value but has a side effect on the passed tree object.