Quadratic polynomial parameters L, m, r
PCMLmr(X, tree, model, metaI = PCMInfo(X, tree, model, verbose = verbose), root.only = TRUE, verbose = FALSE)
X | a |
---|---|
tree | a phylo object with N tips. |
model | an S3 object specifying both, the model type (class, e.g. "OU") as well as the concrete model parameter values at which the likelihood is to be calculated (see also Details). |
metaI | a list returned from a call to |
root.only | logical indicatin whether to return the calculated values of L,m,r only for the root or for all nodes in the tree. |
verbose | logical indicating if some debug-messages should printed. |
A list with the members A,b,C,d,E,f,L,m,r for all nodes in the tree or only for the root if root.only=TRUE.