Plot a tree with regimes

PCMTreePlot(tree,
  palette = PCMColorPalette(PCMTreeNumUniqueRegimes(tree),
  PCMTreeUniqueRegimes(tree)), ...)

Arguments

tree

a phylo with set labels and regimes

palette

a named vector of colors corresponding to the regimes in tree

...

Arguments passed to ggtree, e.g. layout = 'fan', open.angle = 8, size=.25.

Note

Currently, the ggtree package is not on CRAN and therefore it is not explicitly imported by PCMBase.