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Abstract
\n\nThe diversity and phylogeny of dinoflagellates belonging to the Gymnodiniales were studied during a 3-year period at several coastal stations along the Catalan coast (NW Mediterranean) by combining analyses of their morphological features with rDNA sequencing. This approach resulted in the detection of 59 different morphospecies, 13 of which were observed for the first time in the Mediterranean Sea. Fifteen of the detected species were HAB producers; four represented novel detections on the Catalan coast and two in the Mediterranean Sea. Partial rDNA sequences were obtained for 50 different morphospecies, including novel LSU rDNA sequences for 27 species, highlighting the current scarcity of molecular information for this group of dinoflagellates. The combination of morphology and genetics allowed the first determinations of the phylogenetic position of several genera, i.e., Torodinium and many Gyrodinium and Warnowiacean species. The results also suggested that among the specimens belonging to the genera Gymnodinium, Apicoporus, and Cochlodinium were those representing as yet undescribed species. Furthermore, the phylogenetic data suggested taxonomic incongruences for some species, i.e., Gyrodinium undulans and Gymnodinium agaricoides. Although a species complex related to G. spirale was detected, the partial LSU rDNA sequences lacked sufficient resolution to discriminate between various other Gyrodinium morphospecies.
", "funding": [ { "award": { "acronym": "DEVOTES", "id": "00k4n6c32::308392", "identifiers": [ { "identifier": "https://cordis.europa.eu/projects/308392", "scheme": "url" } ], "number": "308392", "program": "FP7", "title": { "en": "DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status" } }, "funder": { "id": "00k4n6c32", "name": "European Commission" } } ], "publication_date": "2015-05-05", "publisher": "Zenodo", "resource_type": { "id": "publication-preprint", "title": { "de": "Preprint", "en": "Preprint" } }, "rights": [ { "description": { "en": "The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited." }, "icon": "cc-by-icon", "id": "cc-by-4.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/licenses/by/4.0/legalcode" }, "title": { "en": "Creative Commons Attribution 4.0 International" } } ], "subjects": [ { "subject": "Dinoflagellates" }, { "subject": "HAB" }, { "subject": "naked" }, { "subject": "phylogeny" }, { "subject": "rDNA" }, { "subject": "single-cell PCR" } ], "title": "Diversity and Phylogeny of Gymnodiniales (Dinophyceae) from the NW Mediterranean Sea Revealed by a Morphological and Molecular Approach" }, "parent": { "access": { "owned_by": { "user": 2614 } }, "communities": { "default": "dbcff579-0f08-4469-a06c-64e85d204054", "entries": [ { "access": { "member_policy": "open", "members_visibility": "public", "record_policy": "open", "review_policy": "open", "visibility": "public" }, "children": { "allow": false }, "created": "2014-03-09T08:29:34+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "id": "dbcff579-0f08-4469-a06c-64e85d204054", "links": {}, "metadata": { "curation_policy": "The collection includes research publications and research output fully or partially funded by FP7 DEVOTES (Grant Agreement 308392)", "page": "DEVOTES is an international research project funded by the European Commission, within the Environment (including climate change) Theme of the 7th Framework Programme of the European Union.
\r\nThe overall goal of DEVOTES is to test indicators proposed by the EC and to develop new ones for the assessment at the species, habitat and ecosystem levels, which will lead to a classification status of marine waters. A cost-effective (i.e. by defining monitoring and assessment strategies) implementation of the indicators will be integrated into a unified assessment of the biodiversity.
\r\nThe outcomes of DEVOTES will contribute to filling knowledge gaps and existing needs in the assessment of the environmental status, within the Marine Strategy Framework Directive, in an harmonized way across the Mediterranean, Baltic, North Seas and the Atlantic Ocean.
PROJECT ACRONYM: DEVOTES
\r\nFULL PROJECT TITLE: DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status.
\r\nGRANT AGREEMENT NUMBER: 308392
\r\nFP7 THEME: Environment (Including Climate Change)
\r\nINSTRUMENT: Collaborative project
\r\nTOTAL BUDGET: € 12,050,970.10
\r\nEC CONTRIBUTION: € 8,997,984.62
\r\nDURATION: 1st November 2012 to 31st October 2016
\r\nNUMBER OF PROJECT PARTNERS: 23
\r\nWEBSITE: www.devotes-project.eu
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", "description": "Open repository for EU-funded research outputs from Horizon Europe, Euratom and earlier Framework Programmes.", "organizations": [ { "id": "00k4n6c32" } ], "page": "The EU Open Research Repository is a Zenodo-community dedicated to fostering open science and enhancing the visibility and accessibility of research outputs funded by the European Union. The community is managed by CERN on behalf of the European Commission.
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