There is a newer version of this record available.

Software Open Access

reconhub/incidence: Incidence version 1.5.2

Thibaut Jombart; Zhian N. Kamvar; Jun Cai; Sarah Chisholm; Rich FitzJohn; Jakob Schumacher; Sangeeta Bhatia

This release of incidence includes a couple of bug fixes and also updates the incidence demo. This is the first CRAN version since 1.5.0. For incidence > 1.5.0, the way the object is constructed and plotted differs. Mainly, the ordering of the groups in the epicurve will match the ordering of the groups in the incidence object (previously, they were ordered alphabetically):

library("incidence")
set.seed(2018-11-01)
dat <- rpois(200, 10)
me  <- c("Mordor", "Shire", "Isengard", "Eisengard")
grp <- sample(me, 
              200,
              replace = TRUE,
              prob = c(1, 1, 1, 0.05))
i   <- incidence(dat, group = grp)
plot(i, show_cases = TRUE)

i   <- incidence(dat, group = factor(grp, me))
plot(i, show_cases = TRUE)

group_names(i)
#> [1] "Mordor"    "Shire"     "Isengard"  "Eisengard"

<sup>Created on 2018-11-30 by the [reprex package](https://reprex.tidyverse.org) (v0.2.1)</sup>

Files (5.0 MB)
Name Size
reconhub/incidence-1.5.2.zip
md5:e4e82480f65d2d245318ab8ee6b0dd66
5.0 MB Download
79
47
views
downloads
All versions This version
Views 791
Downloads 473
Data volume 245.6 MB15.1 MB
Unique views 591
Unique downloads 213

Share

Cite as