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Burkholderia cenocepacia data RNA-Seq analysis scripts for Sass et al.

Sass, Andrea M. ; Van Acker, Heleen ; Förstner, Konrad U.; Van Nieuwerburgh, Filip; Deforce, Dieter ; Vogel, Jörg ; Coenye, Tom


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<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Sass, Andrea M. </dc:creator>
  <dc:creator>Van Acker, Heleen </dc:creator>
  <dc:creator>Förstner, Konrad U.</dc:creator>
  <dc:creator> Van Nieuwerburgh, Filip</dc:creator>
  <dc:creator>Deforce, Dieter </dc:creator>
  <dc:creator>Vogel, Jörg </dc:creator>
  <dc:creator>Coenye, Tom</dc:creator>
  <dc:date>2016-05-05</dc:date>
  <dc:description>These shell scripts are part of the publication "Genome-widetranscription start site profiling in biofilm-grown Burkholderia cenocepacia J2315" by Andrea Sass et al. (DOI:10.1186/s12864-015-1993-3).

Please generate a folder "FASTQ" and add the raw sequences in FASTQ format (deposited at ArrayExpress under the accession number E-MTAB-3381) in that folder. The files should be called the following:


	RNA_BF1_minus_TEX.fq.bz2
	RNA_BF1_plus_TEX.fq.bz2
	RNA_BF2_minus_TEX.fq.bz2
	RNA_BF2_plus_TEX.fq.bz2


To perform the analysis run

./run_analysis.sh

Please make sure that the software is installed and the variable are set accordingly in run_analysis.sh. To install the required software you can use

./install_software.sh</dc:description>
  <dc:identifier>https://zenodo.org/record/17358</dc:identifier>
  <dc:identifier>10.5281/zenodo.17358</dc:identifier>
  <dc:identifier>oai:zenodo.org:17358</dc:identifier>
  <dc:relation>doi:10.1186/s12864-015-1993-3</dc:relation>
  <dc:relation>pmid:PMID:25646441</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://opensource.org/licenses/ISC</dc:rights>
  <dc:subject>RNA-Seq</dc:subject>
  <dc:subject>Burkholderia cenocepacia</dc:subject>
  <dc:title>Burkholderia cenocepacia data RNA-Seq analysis scripts for Sass et al.</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
</oai_dc:dc>
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