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Burkholderia cenocepacia data RNA-Seq analysis scripts for Sass et al.

Sass, Andrea M. ; Van Acker, Heleen ; Förstner, Konrad U.; Van Nieuwerburgh, Filip; Deforce, Dieter ; Vogel, Jörg ; Coenye, Tom


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    "description": "<p>These shell scripts are part of the publication &quot;Genome-widetranscription start site profiling in biofilm-grown Burkholderia cenocepacia J2315&quot; by Andrea Sass et al. (DOI:10.1186/s12864-015-1993-3).</p>\n\n<p>Please generate a folder &quot;FASTQ&quot; and add the raw sequences in FASTQ format (deposited at ArrayExpress under the accession number E-MTAB-3381) in that folder. The files should be called the following:</p>\n\n<ul>\n\t<li>RNA_BF1_minus_TEX.fq.bz2</li>\n\t<li>RNA_BF1_plus_TEX.fq.bz2</li>\n\t<li>RNA_BF2_minus_TEX.fq.bz2</li>\n\t<li>RNA_BF2_plus_TEX.fq.bz2</li>\n</ul>\n\n<p>To perform the analysis run</p>\n\n<p>./run_analysis.sh</p>\n\n<p>Please make sure that the software is installed and the variable are set accordingly in run_analysis.sh. To install the required software you can use</p>\n\n<p>./install_software.sh</p>", 
    "license": {
      "id": "ISC"
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    "title": "Burkholderia cenocepacia data RNA-Seq analysis scripts for Sass et al.", 
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    "keywords": [
      "RNA-Seq", 
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    "publication_date": "2016-05-05", 
    "creators": [
      {
        "affiliation": "Laboratory of Pharmaceutical Microbiology, Ghent University, Ghent, Belgium", 
        "name": "Sass, Andrea M. "
      }, 
      {
        "affiliation": "Laboratory of Pharmaceutical Microbiology, Ghent University, Ghent, Belgium", 
        "name": "Van Acker, Heleen "
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      {
        "affiliation": "Core Unit Systems Medicine, University of W\u00fcrzburg, Germany", 
        "name": "F\u00f6rstner, Konrad U."
      }, 
      {
        "affiliation": "Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium", 
        "name": " Van Nieuwerburgh, Filip"
      }, 
      {
        "affiliation": "Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium", 
        "name": "Deforce, Dieter "
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      {
        "affiliation": "Institute for Molecular Infection Biology, University of W\u00fcrzburg, Germany", 
        "name": "Vogel, J\u00f6rg "
      }, 
      {
        "affiliation": "Laboratory of Pharmaceutical Microbiology, Ghent University, Ghent, Belgium", 
        "name": "Coenye, Tom"
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