Dataset Open Access

RNA-Seq read counts from monocyte- and ips-derived macrophages

Alasoo, Kaur


MARC21 XML Export

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    <subfield code="u">http://creativecommons.org/licenses/by/4.0/legalcode</subfield>
    <subfield code="a">Creative Commons Attribution 4.0 International</subfield>
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  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2015-04-10</subfield>
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  <controlfield tag="005">20191101071359.0</controlfield>
  <controlfield tag="001">16739</controlfield>
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    <subfield code="a">&lt;p&gt;This file contains raw RNA-Seq read counts from monocyte-derived macrophages (MDMs)&amp;nbsp;and induced pluripotent stem cell-derived macrophages (IPSDMs)&amp;nbsp;before and after 6 hours stimulation after LPS.&lt;/p&gt;

&lt;p&gt;The file was created using featureCounts.&amp;nbsp;The first two columns are:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;gene_id: Ensembl 74 gene id.&lt;/li&gt;
	&lt;li&gt;length: Length of the gene in bp.&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;The MDM samples are:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;B1_ctrl&lt;/li&gt;
	&lt;li&gt;B1_LPS&lt;/li&gt;
	&lt;li&gt;B4_ctrl&lt;/li&gt;
	&lt;li&gt;B4_LPS&lt;/li&gt;
	&lt;li&gt;B5_ctrl&lt;/li&gt;
	&lt;li&gt;B5_LPS&lt;/li&gt;
	&lt;li&gt;B2_ctrl&lt;/li&gt;
	&lt;li&gt;B2_LPS&lt;/li&gt;
	&lt;li&gt;B3_ctrl&lt;/li&gt;
	&lt;li&gt;B3_LPS&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;The IPSDM samples are:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;CRL1_ctrl&lt;/li&gt;
	&lt;li&gt;CRL1_LPS&lt;/li&gt;
	&lt;li&gt;S7RE_ctrl&lt;/li&gt;
	&lt;li&gt;S7RE_LPS&lt;/li&gt;
	&lt;li&gt;FSPS10C_ctrl&lt;/li&gt;
	&lt;li&gt;FSPS10C_LPS&lt;/li&gt;
	&lt;li&gt;FSPS11B_ctrl&lt;/li&gt;
	&lt;li&gt;FSPS11B_LPS&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;</subfield>
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    <subfield code="u">https://zenodo.org/record/16739/files/macrophage_combined_counts.txt</subfield>
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    <subfield code="l">open</subfield>
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    <subfield code="a">dataset</subfield>
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    <subfield code="u">Wellcome Trust Sanger Institute</subfield>
    <subfield code="0">(orcid)0000-0002-1761-8881</subfield>
    <subfield code="a">Alasoo, Kaur</subfield>
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    <subfield code="a">RNA-Seq</subfield>
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  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">Macrophages</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">ips cells</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">lipopolysaccharide</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">LPS</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.16739</subfield>
    <subfield code="2">doi</subfield>
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    <subfield code="a">RNA-Seq read counts from monocyte- and ips-derived macrophages</subfield>
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    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
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