Dataset Open Access

RNA-Seq read counts from monocyte- and ips-derived macrophages

Alasoo, Kaur


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<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
  <identifier identifierType="DOI">10.5281/zenodo.16739</identifier>
  <creators>
    <creator>
      <creatorName>Alasoo, Kaur</creatorName>
      <givenName>Kaur</givenName>
      <familyName>Alasoo</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-1761-8881</nameIdentifier>
      <affiliation>Wellcome Trust Sanger Institute</affiliation>
    </creator>
  </creators>
  <titles>
    <title>RNA-Seq read counts from monocyte- and ips-derived macrophages</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2015</publicationYear>
  <subjects>
    <subject>RNA-Seq</subject>
    <subject>Macrophages</subject>
    <subject>ips cells</subject>
    <subject>lipopolysaccharide</subject>
    <subject>LPS</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2015-04-10</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/16739</alternateIdentifier>
  </alternateIdentifiers>
  <rightsList>
    <rights rightsURI="http://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This file contains raw RNA-Seq read counts from monocyte-derived macrophages (MDMs)&amp;nbsp;and induced pluripotent stem cell-derived macrophages (IPSDMs)&amp;nbsp;before and after 6 hours stimulation after LPS.&lt;/p&gt;

&lt;p&gt;The file was created using featureCounts.&amp;nbsp;The first two columns are:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;gene_id: Ensembl 74 gene id.&lt;/li&gt;
	&lt;li&gt;length: Length of the gene in bp.&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;The MDM samples are:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;B1_ctrl&lt;/li&gt;
	&lt;li&gt;B1_LPS&lt;/li&gt;
	&lt;li&gt;B4_ctrl&lt;/li&gt;
	&lt;li&gt;B4_LPS&lt;/li&gt;
	&lt;li&gt;B5_ctrl&lt;/li&gt;
	&lt;li&gt;B5_LPS&lt;/li&gt;
	&lt;li&gt;B2_ctrl&lt;/li&gt;
	&lt;li&gt;B2_LPS&lt;/li&gt;
	&lt;li&gt;B3_ctrl&lt;/li&gt;
	&lt;li&gt;B3_LPS&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;The IPSDM samples are:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;CRL1_ctrl&lt;/li&gt;
	&lt;li&gt;CRL1_LPS&lt;/li&gt;
	&lt;li&gt;S7RE_ctrl&lt;/li&gt;
	&lt;li&gt;S7RE_LPS&lt;/li&gt;
	&lt;li&gt;FSPS10C_ctrl&lt;/li&gt;
	&lt;li&gt;FSPS10C_LPS&lt;/li&gt;
	&lt;li&gt;FSPS11B_ctrl&lt;/li&gt;
	&lt;li&gt;FSPS11B_LPS&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;</description>
  </descriptions>
</resource>
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