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Published October 19, 2016 | Version v1
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RDF Representation of RNA Metabolism Evolution data - version 3 (diagrammed in https://zenodo.org/deposit/47641/)

Contributors

  • 1. CBGP-UPM/INIA

Description

Version 3 (replaces http://doi.org/10.5281/zenodo.50496)

Protein complexes involved in RNA Metabolism; individual proteins and their orthologues through a wide range of fungal species spanning much of the kingdom (using yeast as the primary seed for orthology search, and using the EMBL-EBI orthologue database to identify orthologues).  For each family of orthologues, the protein domain structure is determined, and then the presence/absence of that domain is evaluated in each of the species.  The data is presented in RDF, and is visualized in the form of Heat Maps in http://doi.org/10.5281/zenodo.47641

Files

orthologues.txt

Files (9.1 MB)

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md5:873d87888fc31c942d61e41b1cb75efa
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md5:9dc4627aa6be6dda831ab927580b5a11
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md5:175259f7a9196cad23e8cb9e78e51796
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Additional details

Related works

Is cited by
10.7717/peerj-cs.110 (DOI)
Is new version of
10.5281/zenodo.50496 (DOI)
10.5281/zenodo.161685 (DOI)
Is supplement to
10.5281/zenodo.47641 (DOI)

References

  • Toni Gabaldón, Christophe Dessimoz, Julie Huxley-Jones, Albert J Vilella, Erik LL Sonnhammer and Suzanna Lewis,Joining forces in the quest for orthologs. Genome Biology10:403 (2009) - DOI: 10.1186/gb-2009-10-9-403 Published: 29 September 2009