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PredictiveEcology/SpaDES: v1.3.0

Eliot McIntire; Alex Chubaty; Yong Luo; Sarah Bauduin; Steve Cumming; ygc2l

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<oai_dc:dc xmlns:dc="" xmlns:oai_dc="" xmlns:xsi="" xsi:schemaLocation="">
  <dc:creator>Eliot McIntire</dc:creator>
  <dc:creator>Alex Chubaty</dc:creator>
  <dc:creator>Yong Luo</dc:creator>
  <dc:creator>Sarah Bauduin</dc:creator>
  <dc:creator>Steve Cumming</dc:creator>
  <dc:description>Known issues:
version 1.3.0

stricter package version dependencies in Imports and Suggests
debug argument in spades() can now take any expression, character strings. TRUE/FALSE changed behavior to show only current event.
timeunits: when there are parent and grandparent modules, if timeunit is defined, it overrides the "smallest unit" rule. Thus, a parent module can force a timeunit.
Plot - enhancements and fixes:

more robust base plotting and many visual tests on Windows;
re-add col arg to Plot (mimicks cols). Was lost from version 1.1.2;
allow any arbitrary function to be used internally to Plot (e.g., barplot, plot, etc.);
add arr argument to Plot(), allowing passing of arrangement;
allow title arg in Plot() to accept character for plot title;
Plot can use character passed to title as a title;
some additional functionality for plotting of factor rasters, incl. clickValues, legends correct for wide variety of types;
change new arg in Plot(). Now it does one plot at a time, not whole device. Use clearPlot() to wipe whole device.

Add modulesGraph, showing parent and child module relationships.
Add filesOnly arg to shine(). This can be in preparation for publishing to or other pages. Currently still alpha.
Add POM: Pattern Oriented Modeling (#269). A simple interface to a simList object, allowing fitting parameters to data.
add .inputObjects functionality -- function that runs during simInit() to create default inputObjects
add P as a namespaced shortcut for params: P(sim) would replace params(sim)$moduleName when called from within that module
allow params(sim) &amp; start(sim) &amp; others in defineModule() by changing parse order in module metadata
add explicit cl arg to parallel aware functions, for more control
newModule gains new arguments type = c("child", "parent") and children = c(). See ?newModule (#300).
module structure now includes an R subfolder for R scripts. These will be parsed during simInit.
checksums updated to use faster hashing algorithm (xxhash64) and now only requires a single hash value per file (#295)
new Rstudio addin for 'newModule' (#298); requires Import of shiny (&gt;= 0.13), miniUI (&gt;= 0.1.1), and rstudioapi (&gt;= 0.5)
fixed bugs in module template
fixed bug in cir (#288, #311)
improved use of package options; added new option spades.modulesPath.
improved downloadModule to use option spades.modulesPath (#309)
improved specification of module inputs and outputs (#189, #214, PR#310)
remove module version warning (#312)
other tweaks and fixes
  <dc:title>PredictiveEcology/SpaDES: v1.3.0</dc:title>
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