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Graphing and tabulating next-generation sequencing and genotyping data

Gilks, William

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<oai_dc:dc xmlns:dc="" xmlns:oai_dc="" xmlns:xsi="" xsi:schemaLocation="">
  <dc:creator>Gilks, William</dc:creator>
  <dc:description>Making figures and tables for publication. Each zip archive contains input data, shell script to initiate and log R script, one R script for generating several graphs and tables, and the output graphs and tables themselves.

Data was generated by whole-genome resequencing of 22 individual D.melanogaster from Sussex-LHM population and 2 from the Sussex RG line, followed by read-mapping, then genotyping with Haplotype Caller and Genomestrip.

Locations for raw data, code, logs, extended QC data:

Sequence reads NCBI SRA268956


NCBI dbVar accession number pre-release nstd134


The pre-print manuscript for this data is available on biorxiv: "Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample" doi:

  <dc:description>The principle researcher for this project was additionally funded by a Royal Society University Research Fellowship (UK).</dc:description>
  <dc:title>Graphing and tabulating next-generation sequencing and genotyping data</dc:title>
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