Dataset Open Access

Graphing and tabulating next-generation sequencing and genotyping data

Gilks, William


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  <dc:creator>Gilks, William</dc:creator>
  <dc:date>2016-10-04</dc:date>
  <dc:description>Making figures and tables for publication. Each zip archive contains input data, shell script to initiate and log R script, one R script for generating several graphs and tables, and the output graphs and tables themselves.

Data was generated by whole-genome resequencing of 22 individual D.melanogaster from Sussex-LHM population and 2 from the Sussex RG line, followed by read-mapping, then genotyping with Haplotype Caller and Genomestrip.

Locations for raw data, code, logs, extended QC data:

Sequence reads NCBI SRA268956

NCBI dbSNP https://www.ncbi.nlm.nih.gov/projects/SNP/snp_viewBatch.cgi?sbid=1062461

NCBI dbVar accession number pre-release nstd134

 

The pre-print manuscript for this data is available on biorxiv: "Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554

 </dc:description>
  <dc:description>The principle researcher for this project was additionally funded by a Royal Society University Research Fellowship (UK).</dc:description>
  <dc:identifier>https://zenodo.org/record/159282</dc:identifier>
  <dc:identifier>10.5281/zenodo.159282</dc:identifier>
  <dc:identifier>oai:zenodo.org:159282</dc:identifier>
  <dc:relation>info:eu-repo/grantAgreement/EC/FP7/280632/</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/drosophila</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/ecfunded</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/sussex_drosophila_sequencing</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/william_gilks</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:subject>R</dc:subject>
  <dc:subject>genomics</dc:subject>
  <dc:subject>Drosophila</dc:subject>
  <dc:title>Graphing and tabulating next-generation sequencing and genotyping data</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
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