Dataset Open Access

Graphing and tabulating next-generation sequencing and genotyping data

Gilks, William


JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/fa410f68-08f9-494d-beb2-ec6c08f9443d/genomestrip_cnv_analysis.zip"
      }, 
      "checksum": "md5:fa707b78c5d77a981b2a5d7cfa362482", 
      "bucket": "fa410f68-08f9-494d-beb2-ec6c08f9443d", 
      "key": "genomestrip_cnv_analysis.zip", 
      "type": "zip", 
      "size": 535062
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/fa410f68-08f9-494d-beb2-ec6c08f9443d/haplotypeCaller_snp_analysis.zip"
      }, 
      "checksum": "md5:1c9c5b87ba8226cbaac2ffdfecc5cb2f", 
      "bucket": "fa410f68-08f9-494d-beb2-ec6c08f9443d", 
      "key": "haplotypeCaller_snp_analysis.zip", 
      "type": "zip", 
      "size": 63816657
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/fa410f68-08f9-494d-beb2-ec6c08f9443d/sequencing_quality_analysis.zip"
      }, 
      "checksum": "md5:1a4194ec94de39d5463face9d0f61361", 
      "bucket": "fa410f68-08f9-494d-beb2-ec6c08f9443d", 
      "key": "sequencing_quality_analysis.zip", 
      "type": "zip", 
      "size": 2395446
    }
  ], 
  "owners": [
    22153
  ], 
  "doi": "10.5281/zenodo.159282", 
  "stats": {
    "version_unique_downloads": 40.0, 
    "unique_views": 288.0, 
    "views": 302.0, 
    "version_views": 302.0, 
    "unique_downloads": 40.0, 
    "version_unique_views": 288.0, 
    "volume": 2608880994.0, 
    "version_downloads": 79.0, 
    "downloads": 79.0, 
    "version_volume": 2608880994.0
  }, 
  "links": {
    "doi": "https://doi.org/10.5281/zenodo.159282", 
    "latest_html": "https://zenodo.org/record/159282", 
    "bucket": "https://zenodo.org/api/files/fa410f68-08f9-494d-beb2-ec6c08f9443d", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.159282.svg", 
    "html": "https://zenodo.org/record/159282", 
    "latest": "https://zenodo.org/api/records/159282"
  }, 
  "created": "2016-10-09T16:48:03.733131+00:00", 
  "updated": "2020-01-24T19:23:47.413875+00:00", 
  "conceptrecid": "654711", 
  "revision": 15, 
  "id": 159282, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.159282", 
    "description": "<p>Making figures and tables for publication. Each zip archive contains input data, shell script to initiate and log R script, one R script for generating several graphs and tables, and the output graphs and tables themselves.</p>\n\n<p>Data was generated by whole-genome resequencing of 22 individual D.melanogaster from Sussex-LHM population and 2 from the Sussex RG line, followed by read-mapping, then genotyping with Haplotype Caller and Genomestrip.</p>\n\n<p>Locations for raw data, code, logs, extended QC data:</p>\n\n<p>Sequence reads NCBI SRA268956</p>\n\n<p>NCBI dbSNP https://www.ncbi.nlm.nih.gov/projects/SNP/snp_viewBatch.cgi?sbid=1062461</p>\n\n<p>NCBI dbVar accession number pre-release nstd134</p>\n\n<p>\u00a0</p>\n\n<p>The pre-print manuscript for this data is available on biorxiv: \"Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample\" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554</p>\n\n<p>\u00a0</p>", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "title": "Graphing and tabulating next-generation sequencing and genotyping data", 
    "notes": "The principle researcher for this project was additionally funded by a Royal Society University Research Fellowship (UK).", 
    "relations": {
      "version": [
        {
          "count": 1, 
          "index": 0, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "654711"
          }, 
          "is_last": true, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "159282"
          }
        }
      ]
    }, 
    "communities": [
      {
        "id": "drosophila"
      }, 
      {
        "id": "ecfunded"
      }, 
      {
        "id": "sussex_drosophila_sequencing"
      }, 
      {
        "id": "william_gilks"
      }
    ], 
    "grants": [
      {
        "code": "280632", 
        "links": {
          "self": "https://zenodo.org/api/grants/10.13039/501100000780::280632"
        }, 
        "title": "Sex-specific genetic effects on fitness and human disease", 
        "acronym": "2SEXES_1GENOME", 
        "program": "FP7", 
        "funder": {
          "doi": "10.13039/501100000780", 
          "acronyms": [], 
          "name": "European Commission", 
          "links": {
            "self": "https://zenodo.org/api/funders/10.13039/501100000780"
          }
        }
      }
    ], 
    "keywords": [
      "R", 
      "genomics", 
      "Drosophila"
    ], 
    "publication_date": "2016-10-04", 
    "creators": [
      {
        "affiliation": "University of Sussex", 
        "name": "Gilks, William"
      }
    ], 
    "access_right": "open", 
    "resource_type": {
      "type": "dataset", 
      "title": "Dataset"
    }
  }
}
302
79
views
downloads
All versions This version
Views 302302
Downloads 7979
Data volume 2.6 GB2.6 GB
Unique views 288288
Unique downloads 4040

Share

Cite as