Dataset Open Access

Graphing and tabulating next-generation sequencing and genotyping data

Gilks, William


DataCite XML Export

<?xml version='1.0' encoding='utf-8'?>
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
  <identifier identifierType="DOI">10.5281/zenodo.159282</identifier>
  <creators>
    <creator>
      <creatorName>Gilks, William</creatorName>
      <givenName>William</givenName>
      <familyName>Gilks</familyName>
      <affiliation>University of Sussex</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Graphing and tabulating next-generation sequencing and genotyping data</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2016</publicationYear>
  <subjects>
    <subject>R</subject>
    <subject>genomics</subject>
    <subject>Drosophila</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2016-10-04</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/159282</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/drosophila</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/ecfunded</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/sussex_drosophila_sequencing</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/william_gilks</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Making figures and tables for publication. Each zip archive contains input data, shell script to initiate and log R script, one R script for generating several graphs and tables, and the output graphs and tables themselves.&lt;/p&gt;

&lt;p&gt;Data was generated by whole-genome resequencing of 22 individual D.melanogaster from Sussex-LHM population and 2 from the Sussex RG line, followed by read-mapping, then genotyping with Haplotype Caller and Genomestrip.&lt;/p&gt;

&lt;p&gt;Locations for raw data, code, logs, extended QC data:&lt;/p&gt;

&lt;p&gt;Sequence reads NCBI SRA268956&lt;/p&gt;

&lt;p&gt;NCBI dbSNP https://www.ncbi.nlm.nih.gov/projects/SNP/snp_viewBatch.cgi?sbid=1062461&lt;/p&gt;

&lt;p&gt;NCBI dbVar accession number pre-release nstd134&lt;/p&gt;

&lt;p&gt; &lt;/p&gt;

&lt;p&gt;The pre-print manuscript for this data is available on biorxiv: "Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554&lt;/p&gt;

&lt;p&gt; &lt;/p&gt;</description>
    <description descriptionType="Other">The principle researcher for this project was additionally funded by a Royal Society University Research Fellowship (UK).</description>
  </descriptions>
  <fundingReferences>
    <fundingReference>
      <funderName>European Commission</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000780</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/EC/FP7/280632/">280632</awardNumber>
      <awardTitle>Sex-specific genetic effects on fitness and human disease</awardTitle>
    </fundingReference>
  </fundingReferences>
</resource>
302
79
views
downloads
All versions This version
Views 302302
Downloads 7979
Data volume 2.6 GB2.6 GB
Unique views 288288
Unique downloads 4040

Share

Cite as