Dataset Open Access

Graphing and tabulating next-generation sequencing and genotyping data

Gilks, William


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.159282", 
  "title": "Graphing and tabulating next-generation sequencing and genotyping data", 
  "issued": {
    "date-parts": [
      [
        2016, 
        10, 
        4
      ]
    ]
  }, 
  "abstract": "<p>Making figures and tables for publication. Each zip archive contains input data, shell script to initiate and log R script, one R script for generating several graphs and tables, and the output graphs and tables themselves.</p>\n\n<p>Data was generated by whole-genome resequencing of 22 individual D.melanogaster from Sussex-LHM population and 2 from the Sussex RG line, followed by read-mapping, then genotyping with Haplotype Caller and Genomestrip.</p>\n\n<p>Locations for raw data, code, logs, extended QC data:</p>\n\n<p>Sequence reads NCBI SRA268956</p>\n\n<p>NCBI dbSNP https://www.ncbi.nlm.nih.gov/projects/SNP/snp_viewBatch.cgi?sbid=1062461</p>\n\n<p>NCBI dbVar accession number pre-release nstd134</p>\n\n<p>\u00a0</p>\n\n<p>The pre-print manuscript for this data is available on biorxiv: \"Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample\" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554</p>\n\n<p>\u00a0</p>", 
  "author": [
    {
      "family": "Gilks, William"
    }
  ], 
  "note": "The principle researcher for this project was additionally funded by a Royal Society University Research Fellowship (UK).", 
  "type": "dataset", 
  "id": "159282"
}
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