Dataset Open Access
Read-mapping for next-generation sequencing data (Drosophila melanogaster)
Gilks, William
Code, logs and quality-control data for whole-genome resequencing of Sussex-LHM and RG Drosophila melanogaster.
Mapping code is in the archive lhm_mapping_scripts.zip
Mapping logs are in the in the archive lhm_mapping_logs.zip
Other zip archives contain the quality control data.
The pre-print manuscript for this data is available on biorxiv: "Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554
Files
(305.1 MB)
| Name | Size | |
|---|---|---|
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aligment_summary_metrics.zip
md5:6a641881a474acb252654510d46efc49 |
205.6 kB | Download |
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baseCovDistr.zip
md5:7c2db114a700f47d06325f7c3f191a4c |
935.4 kB | Download |
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callable_loci.zip
md5:1ca2b860dff173f637c0f5803fd1c514 |
74.5 kB | Download |
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dup_counts.zip
md5:9f68814018c0d8fecca799bc446237ae |
346.9 kB | Download |
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error_rates.zip
md5:04a729576d1f2d54dd1085ae98992867 |
386.8 kB | Download |
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insert_sizes.zip
md5:b834270a3d01f8410fddcfafa687d249 |
1.2 MB | Download |
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lhm_mapping_logs.zip
md5:d1bf73c825c2a1a954d4c8154bae4be6 |
7.3 MB | Download |
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lhm_mapping_scripts.zip
md5:2d5e0db14b46ce1f89bf040f098db8b6 |
441.5 kB | Download |
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qualDistrMetrics.zip
md5:3018e90b0b8b3f4eb098969ab4062fd2 |
212.3 kB | Download |
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quality_by_cycle.zip
md5:ee229a7db77716b26b27efb206652bb8 |
450.9 kB | Download |
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readLengthDistr.zip
md5:e2be3e04b14d3393fd1c7c8d6b204b4d |
178.8 kB | Download |
|
realignment_intervals.zip
md5:15aece5e4cae358a890f60ba8448bac1 |
293.4 MB | Download |
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downloads
| All versions | This version | |
|---|---|---|
| Views | 136 | 135 |
| Downloads | 67 | 67 |
| Data volume | 1.2 GB | 1.2 GB |
| Unique views | 130 | 129 |
| Unique downloads | 19 | 19 |
Indexed in
- Publication date:
- October 4, 2016
- DOI:
-
- Keyword(s):
- NGS Drosophila
- Grants:
-
European Commission:
- 2SEXES_1GENOME - Sex-specific genetic effects on fitness and human disease (280632)
- Communities:
- License (for files):
- Creative Commons Attribution 4.0 International