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ramiadantsoa/paleo_lottery: Source code for: The potential role of intrinsic processes in generating abrupt and quasi-synchronous tree declines during the Holocene.

Tanjona Ramiadantsoa


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  <identifier identifierType="DOI">10.5281/zenodo.1576951</identifier>
  <creators>
    <creator>
      <creatorName>Tanjona Ramiadantsoa</creatorName>
      <affiliation></affiliation>
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  <titles>
    <title>ramiadantsoa/paleo_lottery: Source code for: The potential role of intrinsic processes in generating abrupt and quasi-synchronous tree declines during the Holocene.</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2018</publicationYear>
  <dates>
    <date dateType="Issued">2018-11-27</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1576951</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/ramiadantsoa/paleo_lottery/tree/v1.0</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.1576950</relatedIdentifier>
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  <version>v1.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
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  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Mathematica and R codes for the manuscript on abrupt and quasi-synchrony decline of trees during the Holocene.&lt;/p&gt;
&lt;p&gt;The Mathematica code 'clean_complile_data.nb' cleans and compiles the multi-taxa data, including splitting and merging the Pinus subgenera, creating a database for site ID, site coordinates, name, time series summary (length, mean resolution etc), species occurrences, abrupt changes occurrences etc and a second databases for the timing of abrupt increases and decreases for each site for each species.&lt;/p&gt;
&lt;p&gt;The Mathematica code 'code_paleo_lottery.nb' generates all the simulated data and plots all figures in the manuscript and the supplements.&lt;/p&gt;
&lt;p&gt;The R code contains extracts records from Neotoma for hemlock and computes the Bayesian Change Point (BCP) analyses for both empirical and simulated data.&lt;/p&gt;</description>
  </descriptions>
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