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PredictiveEcology/SpaDES: v1.2.0.9011

Alex Chubaty; Eliot McIntire; Yong Luo; Sarah Bauduin; Steve Cumming; ygc2l


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  <identifier identifierType="DOI">10.5281/zenodo.154065</identifier>
  <creators>
    <creator>
      <creatorName>Alex Chubaty</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>Eliot McIntire</creatorName>
      <affiliation>Canadian Forest Service, Government of Canada</affiliation>
    </creator>
    <creator>
      <creatorName>Yong Luo</creatorName>
      <affiliation>Lakehead University</affiliation>
    </creator>
    <creator>
      <creatorName>Sarah Bauduin</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>Steve Cumming</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>ygc2l</creatorName>
      <affiliation></affiliation>
    </creator>
  </creators>
  <titles>
    <title>PredictiveEcology/SpaDES: v1.2.0.9011</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2016</publicationYear>
  <dates>
    <date dateType="Issued">2016-09-14</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/154065</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/PredictiveEcology/SpaDES/tree/v1.2.0.9011</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.594049</relatedIdentifier>
  </relatedIdentifiers>
  <version>v1.2.0.9011</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Known issues: &lt;a href="https://github.com/PredictiveEcology/SpaDES/issues"&gt;https://github.com/PredictiveEcology/SpaDES/issues&lt;/a&gt;&lt;/p&gt;
version 1.2.0.9011
&lt;ul&gt;
&lt;li&gt;Add &lt;code&gt;filesOnly&lt;/code&gt; arg to &lt;code&gt;shine()&lt;/code&gt;. This can be in preparation for publishing to www.shinyapps.io or other pages. Currently still alpha.&lt;/li&gt;
&lt;li&gt;Add POM: Pattern Oriented Modeling (#269). A simple interface to a simList object, allowing fitting parameters to data.&lt;/li&gt;
&lt;li&gt;add &lt;code&gt;col&lt;/code&gt; arg to &lt;code&gt;Plot&lt;/code&gt; (mimicks &lt;code&gt;cols&lt;/code&gt;). Was lost from version 1.1.2.&lt;/li&gt;
&lt;li&gt;add &lt;code&gt;.inputObjects&lt;/code&gt; functionality -- function that runs during &lt;code&gt;simInit()&lt;/code&gt; to create default &lt;code&gt;inputObjects&lt;/code&gt;&lt;/li&gt;
&lt;li&gt;add &lt;code&gt;p&lt;/code&gt; as a namespaced shortcut for params: &lt;code&gt;p(sim)&lt;/code&gt; would replace &lt;code&gt;params(sim)$moduleName&lt;/code&gt;&lt;/li&gt;
&lt;li&gt;allow &lt;code&gt;params(sim)&lt;/code&gt; &amp;amp; &lt;code&gt;start(sim)&lt;/code&gt; &amp;amp; others in &lt;code&gt;defineModule()&lt;/code&gt; by changing parse order in module metadata&lt;/li&gt;
&lt;li&gt;allow any arbitrary function to be used internally to &lt;code&gt;Plot&lt;/code&gt; (&lt;em&gt;e.g.&lt;/em&gt;, barplot, plot, etc.)&lt;/li&gt;
&lt;li&gt;add &lt;code&gt;arr&lt;/code&gt; argument to &lt;code&gt;Plot()&lt;/code&gt;, allowing passing of arrangement&lt;/li&gt;
&lt;li&gt;allow &lt;code&gt;title&lt;/code&gt; arg in &lt;code&gt;Plot()&lt;/code&gt; to accept character for plot title&lt;/li&gt;
&lt;li&gt;change &lt;code&gt;new&lt;/code&gt; arg in &lt;code&gt;Plot()&lt;/code&gt;. Now it does one plot at a time, not whole device. Use &lt;code&gt;clearPlot()&lt;/code&gt; to wipe whole device.&lt;/li&gt;
&lt;li&gt;&lt;code&gt;Plot&lt;/code&gt; can use character passed to &lt;code&gt;title&lt;/code&gt; as a title.&lt;/li&gt;
&lt;li&gt;add &lt;code&gt;RandomFieldsUtils&lt;/code&gt; to Imports&lt;/li&gt;
&lt;li&gt;some additional functionality for factor rasters, incl. &lt;code&gt;clickValues&lt;/code&gt;, legends correct for wide variety of types&lt;/li&gt;
&lt;li&gt;add explicit &lt;code&gt;cl&lt;/code&gt; arg to parallel aware functions, for more control&lt;/li&gt;
&lt;li&gt;&lt;code&gt;newModule&lt;/code&gt; gains new arguments &lt;code&gt;type = c("child", "parent")&lt;/code&gt; and &lt;code&gt;children = c()&lt;/code&gt;. See &lt;code&gt;?newModule&lt;/code&gt; (#300).&lt;/li&gt;
&lt;li&gt;&lt;code&gt;checksums&lt;/code&gt; updated to use faster hashing algorithm (&lt;code&gt;xxhash64&lt;/code&gt;) and now only requires a single hash value per file (#295)&lt;/li&gt;
&lt;li&gt;new Rstudio addin for 'newModule' (#298); requires Import of &lt;code&gt;shiny (&amp;gt;= 0.13)&lt;/code&gt;, &lt;code&gt;miniUI (&amp;gt;= 0.1.1)&lt;/code&gt;, and &lt;code&gt;rstudioapi (&amp;gt;= 0.5)&lt;/code&gt;&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
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