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Published September 6, 2018 | Version v8.3.0
Software Open

SysBioChalmers/yeast-GEM: yeast 8.3.0

Creators

Description

  • Features:
    • Added 225 new reactions and 148 new metabolites, based on growth data from a Biolog substrate usage experiment on carbon, nitrogen, sulfur and phosphorus substrates (PR #149).
  • Fixes/Others:
    • Removed verbose details from README.md (PR #150).
    • Updated RAVEN, which added extra annotation to the .yml file (PR #151).
    • Minor changes to saveYeastModel.m (PR #152).
    • Model is now stored simulating minimal media conditions (PR #157).

NOTE: The .xlsx version of this model has incorrect compartment information in the equation formulas (RXNS tab), due to a bug in the associated saving function.

Files

yeast-GEM-v8.3.0.zip

Files (5.7 MB)

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md5:fcff075fcf59ddb506d374183e9a0248
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Additional details

Related works

Is supplement to
https://github.com/SysBioChalmers/yeast-GEM/tree/v8.3.0 (URL)

Funding

DD-DeCaF – Bioinformatics Services for Data-Driven Design of Cell Factories and Communities 686070
European Commission