Software Open Access
bensassonlab/scripts: Code for yeast population genomic analyses
Douda Bensasson
This is all the code available at the time of publishing:
Bensasson, D., Dicks, J., Ludwig, J.M., Bond, C.J., Elliston, A., Roberts, I.N., James, S.A., 2018. Diverse lineages of Candida albicans live on old oaks. Genetics (in press). Previously in: bioRxiv 341032. https://doi.org/10.1101/341032
In Bensasson et al. we use a script to estimate ploidy using a B-allele frequency approach, and to paint chromosomes for showing admixture.
It includes code used for a four gamete test and to annotate centromeres in:
Bensasson, D. "Evidence for a High Mutation Rate at Rapidly Evolving Yeast Centromeres." BMC Evol Biol 11 (2011): 211. doi:10.1186/1471-2148-11-211.
And it also includes custom scripts, and scripts used with STRUCTURE in:
Tilakaratna, V., Bensasson, D., 2017. Habitat Predicts Levels of Genetic Admixture in Saccharomyces cerevisiae. G3 (Bethesda) 7, 2919–2929. https://doi.org/10.1534/g3.117.041806
| Name | Size | |
|---|---|---|
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bensassonlab/scripts-v1.0.zip
md5:3ed707dcb310361845a1910fc0f38a06 |
108.5 MB | Download |
| All versions | This version | |
|---|---|---|
| Views | 99 | 99 |
| Downloads | 17 | 17 |
| Data volume | 1.8 GB | 1.8 GB |
| Unique views | 90 | 90 |
| Unique downloads | 13 | 13 |
Indexed in
- Publication date:
- November 14, 2018
- DOI:
-
- Related identifiers:
- Supplement to
- License (for files):
- Other (Open)