ResearchObject.org (RO)
Published October 29, 2018 | Version v1
Presentation Open

Capturing interoperable reproducible workflows with Common Workflow Language

Creators

  • 1. The University of Manchester; Common Workflow Language project
  • 2. The University of Melbourne; Common Workflow Language project
  • 3. The University of Melbourne
  • 4. Common Workflow Language project
  • 5. The University of Manchester

Description

We present our ongoing work on integrating Research Object practices with Common Workflow Language, capturing and describing prospective and retrospective provenance with the CWL Viewer and CWLProv.

Full abstract: http://s11.no/2018/cwl.html

Online slides: http://slides.com/soilandreyes/2018-10-29-cwlprov

Notes

Accepted Talk at RO2018

Files

S03E02-Stian Soiland-Reyes - 2018-10-29-cwlprov.pdf

Files (24.1 MB)

Additional details

Cites
10.1186/s12859-017-1747-0 (DOI)
https://s.apache.org/existing-workflow-systems (URL)
https://w3id.org/cwl/v1.0/ (URL)
http://www.commonwl.org/user_guide/ (URL)
http://rabix.io/ (URL)
10.7490/f1000research.1115721.1 (DOI)
10.5281/zenodo.1473157 (DOI)
http://www.w3.org/TR/prov-o/ (URL)
10.5281/zenodo.1215611 (DOI)
https://www.w3.org/TR/prov-overview/ (URL)
https://tools.ietf.org/search/rfc6920 (URL)
https://pypi.org/project/cwlprov/ (URL)
10.5281/zenodo.1473157 (DOI)
10.5281/zenodo.1471376 (DOI)
10.6084/m9.figshare.3115156.v2 (DOI)
Documents
10.5281/zenodo.1312623 (DOI)
Is identical to
http://slides.com/soilandreyes/2018-10-29-cwlprov (URL)
Is supplemented by
https://w3id.org/cwl/view/git/886df9de6713e06228d2560c40f451155a196383/workflows/emg-qc-single.cwl (URL)
References
https://www.slideshare.net/soilandreyes/20171103-scientific-workflow-systems-81801626 (URL)
https://slides.com/farahzkhan/cwlprov (URL)
http://www.commonwl.org/ (URL)
https://www.ebi.ac.uk/metagenomics/ (URL)
https://view.commonwl.org/ (URL)
https://w3id.org/cwl/view (URL)
10.5281/zenodo.1208477 (DOI)
http://researchobject.org/ (URL)
https://github.com/fair-research/bdbag (URL)
https://github.com/biocompute-objects/BCO_Specification (URL)
http://book.validatingrdf.com/ (URL)
https://bioexcel.eu/workflows/ (URL)

Funding

BioExcel – Centre of Excellence for Biomolecular Research 675728
European Commission