Planned intervention: On Wednesday April 3rd 05:30 UTC Zenodo will be unavailable for up to 2-10 minutes to perform a storage cluster upgrade.

There is a newer version of the record available.

Published October 14, 2018 | Version v2018-09-25-PRELEASE
Software Open

oborel/obo-relations: 2018-10-01 PRERELEASE

  • 1. Lawrence Berkeley National Laboratory
  • 2. www.virtualflybrain.org
  • 3. Oregon Health and Science University
  • 4. @RENCI
  • 5. University of Utah
  • 6. @Public-Health-Bioinformatics
  • 7. BIPAA/GenOuest

Description

commit 77d73875a74aaaee4784583cfc8010d21f99e146 Author: cmungall cjm@berkeleybop.org Date: Fri Sep 28 13:54:47 2018 -0700

Further constraining located_in, see comments from Alan: https://github.com/oborel/obo-relations/pull/256#issuecomment-425558558

We keep the weaker D+R constraints in for EL purposes

commit ae9eae11cd51726738ace041a06a61e5e65cc4f4 Author: cmungall cjm@berkeleybop.org Date: Fri Sep 28 13:50:04 2018 -0700

mireot spatial region

commit a8554e84b6afe2eecd0ba682d1f42d3e7a36c0c7 Author: cmungall cjm@berkeleybop.org Date: Wed Sep 26 11:31:24 2018 -0700

Adding SWRL for phosphorylates, see #259

commit 98157a6047023e54d2a247a1f5f0214396afe170 Author: cmungall cjm@berkeleybop.org Date: Wed Sep 26 11:20:55 2018 -0700

domain-range constrs

commit c677fb53557f486729fd307236ec3d77c58bc0b3 Author: cmungall cjm@berkeleybop.org Date: Tue Sep 25 18:03:12 2018 -0700

domain-range constrs

commit e8c15a38feaccbe82bda1c63455b074dff398005 Author: cmungall cjm@berkeleybop.org Date: Tue Sep 25 17:42:25 2018 -0700

Adding organism from CARO - may change label, see https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6

commit c68f0a1aea97f2418b5388b7394847fc668bf46a Author: cmungall cjm@berkeleybop.org Date: Tue Sep 25 17:39:59 2018 -0700

domain/range

commit 5f61d08282260a46aac06a4d05dfb161de4b028e Author: cmungall cjm@berkeleybop.org Date: Tue Sep 25 17:20:52 2018 -0700

domain and range constraints

commit ddbe35e23095197ed97f5e3cf930606ec892971e Author: cmungall cjm@berkeleybop.org Date: Tue Sep 25 16:52:26 2018 -0700

Separating out chemical relations into separate module
See also https://github.com/OBOFoundry/Experimental-OBO-Core/issues/7

commit e8ad2e9b6458e9e1f8bacaeb3687812464623b77 Author: cmungall cjm@berkeleybop.org Date: Tue Sep 25 16:52:24 2018 -0700

for-SLME

commit dbf86d2c29733913b73abec3e461f26137cd5e84 Author: cmungall cjm@berkeleybop.org Date: Tue Sep 25 16:52:07 2018 -0700

imports

commit 2a86292cb4127782e4e73142b2e351ef62b9ea83 Merge: 0619f28 185c458 Author: Chris Mungall cjm@berkeleybop.org Date: Tue Sep 25 16:08:48 2018 -0700

Merge pull request #237 from oborel/issue-235-redux2

Obsoleted "related via dependence to"

commit 0619f28b35d74874c02acde68c2141ff8701b3bd Merge: 1c82785 a3db7f2 Author: Chris Mungall cjm@berkeleybop.org Date: Tue Sep 25 16:02:45 2018 -0700

Merge pull request #256 from oborel/located-in-domain-range

Adding domain-range constraints for located_in, see #255

commit a3db7f2630766ed8100fe24df706fb9836d74fd1 Author: cmungall cjm@berkeleybop.org Date: Tue Sep 11 15:39:26 2018 -0700

Adding domain-range constraints for located_in, see #255

note this changes introduces a spurious diff bringing in
AP declarations, this can be ignored

commit 1c827855be761c96c6cf82586298a6ad2f0e6b91 Merge: 8d29f03 ef15212 Author: Chris Mungall cjm@berkeleybop.org Date: Thu Aug 30 16:57:53 2018 -0700

Merge pull request #233 from msinclair2/master

Add generically depends on and inverse generic bearer of

commit ef152124653a04b4264a05df8bf6775abb06e000 Author: Michael Sinclair michael.sinclair@utah.edu Date: Thu Aug 30 17:28:40 2018 -0600

create property chain with gdo and add is carrier of

commit 06a6e4fbf21bb5d9cc75d4bb4cbccd288393da2b Author: Michael Sinclair michael.sinclair@utah.edu Date: Fri Jul 20 17:09:25 2018 -0600

removed generic bearer of, include only generically depends on per BFO spec

commit e3f5f5a3aa54a46b337e2e0e95cb5c9132a2883e Author: Michael Sinclair michael.sinclair@utah.edu Date: Mon Jun 25 13:46:02 2018 -0600

Add generically depends on and inverse generic bearer of

commit 8d29f0343bb70621c092c299136cd8c994c0b192 Merge: 55a7f51 3f04c7d Author: Chris Mungall cjm@berkeleybop.org Date: Fri Aug 10 11:15:13 2018 -0700

Merge pull request #248 from oborel/cmungall-patch-2

Update README.md

commit 3f04c7debef06cb248b419e27b339f419e1b8088 Author: Chris Mungall cjm@berkeleybop.org Date: Fri Aug 10 11:09:46 2018 -0700

Update README.md

Make google group canonical

commit 55a7f51088c16cc4941c1879be51a6b5b2010328 Author: Chris Mungall cjm@berkeleybop.org Date: Tue Jul 31 08:52:39 2018 -0700

Update README.md

commit 33cff44978a493e5ab8f8a735ec43df23f914014 Merge: a216c15 7252617 Author: Chris Mungall cjm@berkeleybop.org Date: Sun Jul 29 20:37:27 2018 -0700

Merge pull request #245 from oborel/atomic-redux

Making release of atomic (base) file

commit 72526174139c6190800645583309e89420e811a2 Author: cmungall cjm@berkeleybop.org Date: Sun Jul 29 20:28:36 2018 -0700

Renamed component to base

commit f21b93e2606019cbc68dda806c16218ed0caa0bd Author: cmungall cjm@berkeleybop.org Date: Mon May 21 13:40:55 2018 -0700

First attempt at making atomic module, see https://github.com/INCATools/ontology-starter-kit/issues/50

Conflicts:
    src/ontology/ro-edit.owl

commit a216c15a334fcddec5c80b9f72144c0cc5536076 Merge: ff3fd1f b26fa8a Author: Chris Mungall cjm@berkeleybop.org Date: Sun Jul 29 20:13:53 2018 -0700

Merge pull request #232 from oborel/mortality_rate

Data property used to record increases in age-specific mortality rate

commit ff3fd1f77f05a9b59322400cae4eb52aa9b56682 Merge: 65a367e 976634c Author: Chris Mungall cjm@berkeleybop.org Date: Sun Jul 29 20:13:13 2018 -0700

Merge pull request #234 from oborel/cmungall-patch-1

Update ro-idranges.owl

commit 65a367eea8957fb11a397660e6b113ed863de24e Merge: 953ec84 7107c3e Author: Chris Mungall cjm@berkeleybop.org Date: Thu Jul 26 18:20:16 2018 -0700

Merge pull request #243 from balhoff/issue-242

Remove inverse expression superproperty for 'enabled by'.

commit 7107c3e0dcfb6a9b5e8c137139f0785c3f13fcc2 Author: Jim Balhoff jim@balhoff.org Date: Thu Jul 26 10:34:21 2018 -0400

Remove inverse expression super property for 'enabled by'.

commit 185c45862bd66ee18c7fe6823113148107cb1bfb Author: cmungall cjm@berkeleybop.org Date: Sun Jul 8 13:38:18 2018 -0700

Obsoleted "related via dependence to"
This was used to group causal relations and correlative relations.
The grouping was somewhat arbitrary and very poorly defined.
For now we should not group these two sets of relations
Fixes #235

commit 953ec8472b20fec4f820796fc68b29129f948dc4 Merge: d9fa8cd 87a13f3 Author: cmungall cjm@berkeleybop.org Date: Sat Jul 7 12:40:27 2018 -0700

Merge branch 'master' of github.com:oborel/obo-relations

commit 976634ceebc82ff0bb05dbc0116b6c999e6040ad Author: Chris Mungall cjm@berkeleybop.org Date: Mon Jun 25 14:47:45 2018 -0700

Update ro-idranges.owl

Adding id range for @msinclair2

See #233

commit 87a13f3327fa031925b2ba184af158033acc4b7a Author: James A. Overton james@overton.ca Date: Wed Jun 6 14:23:18 2018 -0400

Add diagrams for RO Core

- ROCore_Continuants.jpg shows continuant, occurrent, IDC, SDC, GDC, and the relations among them
- ROCore_SDCs.jpg focuses on the subtypes of SDC and their relations to IDC and occurrent
- ROCore.graffle is the source file for these two diagrams

commit b26fa8a83c47c5fe4f6410775c78bbc1713d4589 Author: dosumis dosumis@gmail.com Date: Tue May 22 18:14:58 2018 +0100

Extended comments and refs.

commit d132eb9eed09c4851eefd7a7d544b4631090c2c2 Author: dosumis dosumis@gmail.com Date: Tue May 22 18:06:41 2018 +0100

Adding data property used to record increases in age-specific mortality rate

Files

oborel/obo-relations-v2018-09-25-PRELEASE.zip

Files (2.9 MB)

Name Size Download all
md5:c8c576281e0a301443995cda23f2a864
2.9 MB Preview Download

Additional details