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Published October 5, 2018 | Version 1.1
Software Open

nf-core/rnaseq: nf-core/rnaseq version 1.1

Creators

  • 1. Science for Life Laboratory
  • 2. @qbicsoftware
  • 3. Inivata
  • 4. @SciLifeLab | Karolinska Institutet
  • 5. @NationalGenomicsInfrastructure @SciLifeLab
  • 6. QBiC @qbicsoftware
  • 7. Comparative Bioinformatics, CRG
  • 8. Genome Institute of Singapore
  • 9. University of Copenhagen
  • 10. National Genomics Infrastructure, Science for Life Laboratory

Description

Pipeline updates

  • Wrote docs and made minor tweaks to the --skip_qc and associated options
  • Removed the depreciated uppmax-modules config profile
  • Updated the hebbe config profile to use the new withName syntax too
  • Use new workflow.manifest variables in the pipeline script
  • Updated minimum nextflow version to 0.32.0
Bug Fixes
  • #77: Added back executor = 'local' for the workflow_summary_mqc
  • #95: Check if task.memory is false instead of null
  • #97: Resolved edge-case where numeric sample IDs are parsed as numbers causing some samples to be incorrectly overwritten.

Files

nf-core/rnaseq-1.1.zip

Files (4.0 MB)

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md5:1f9e1aab6ede9414d71f1a1075991526
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Additional details

Related works

Is supplement to
https://github.com/nf-core/rnaseq/tree/1.1 (URL)