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Pilot integration of REST-based vignette services for the second round biomedical sciences research infrastructures

Birney, Ewan; Braasch, Benjamin; Chambers, Jon; Ison, Jon; Karakoyun, Töresin; McMurry, Julie; Overington, John; Parkinson, Helen; Klein, Stefan; Vast, Erwin; Welter, Danielle; Sanges, Remo; Kottmann, Renzo

This deliverable consists of five pilot studies which integrate and visualise data from across the BioMedBridges domains and the biomedical sciences research infrastructures involved. It builds on the previous WP deliverables and activities (D4.1 to D4.4). The pilots described in this report have varied used cases and cover the following areas:

  1. Sharing medical imaging data
  2. Visualising and leveraging ontologies in queries
  3. Connectivity-based searching for drugs in UniChem
  4. Integrating gene and drug information with a clinical trials registry
  5. Sharing and visualising sequencing data from environmentally-derived biological samples.

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