Preview

jefferis-elmr-41996b4
- .Rbuildignore
  
  107 Bytes
- .gitignore
  
  124 Bytes
- .travis.yml
  
  515 Bytes
- DESCRIPTION
  
  1.2 kB
- NAMESPACE
  
  1.8 kB
- NEWS.md
  
  2.2 kB
- R
  - contributions.R
    
    3.4 kB
  - elmr-data.R
    
    6.3 kB
  - elmr-package.R
    
    3.4 kB
  - fafb_mapper.R
    
    4.2 kB
  - make_template.R
    
    509 Bytes
  - nblast_fafb.R
    
    8.1 kB
  - ngraph.R
    
    2.6 kB
  - open_fafb.R
    
    5.5 kB
  - plot3d.R
    
    1.4 kB
  - simplify_neuron.R
    
    4.9 kB
  - stitch_neuron.R
    
    4.0 kB
  - unspike.R
    
    5.3 kB
  - xform_tps.R
    
    3.2 kB
  - zzz.R
    
    3.4 kB
- README.md
  
  4.0 kB
- _pkgdown.yml
  
  816 Bytes
- data
  - FAFB.surf.rda
    
    307.7 kB
  - FAFB13.surf.rda
    
    308.0 kB
  - FAFB13NP.surf.rda
    
    846.1 kB
  - FAFB14.surf.rda
    
    307.7 kB
  - FAFB14NP.surf.rda
    
    845.6 kB
  - FAFBNP.surf.rda
    
    845.6 kB
  - dense_core_neurons.rda
    
    35.9 kB
  - elm.landmarks.12.rda
    
    7.4 kB
  - elm.landmarks.13.rda
    
    7.3 kB
  - elm.landmarks.rda
    
    6.7 kB
  - templatebrains.R
    
    1.6 kB
- data-raw
  - 170211_new_ELM_landmarks_v7.csv
    
    9.7 kB
  - 170303_ELM_landmarks_v14.csv
    
    18.6 kB
  - dense_core_neurons.R
    
    242 Bytes
  - landmarks.R
    
    1.8 kB
  - surfaces.R
    
    629 Bytes
  - templatebrains.R
    
    495 Bytes
- docs
  - articles
    - articles
      - multiple_somata.html
        
        58.4 kB
      - multiple_somata_files
        
        figure-html
        
        unnamed-chunk-4-1.png
        
        456.5 kB
    - index.html
      
      5.0 kB
    - landmarks.html
      
      64.0 kB
    - landmarks_files
      - figure-html
        
        unnamed-chunk-2-1.png
        
        387.5 kB
        
        unnamed-chunk-4-1.png
        
        45.8 kB
        
        unnamed-chunk-6-1.png
        
        452.4 kB
        
        unnamed-chunk-7-1.png
        
        335.1 kB
        
        unnamed-chunk-8-1.png
        
        97.8 kB
        
        unnamed-chunk-9-1.png
        
        340.7 kB
    - making_meshes.html
      
      13.2 kB
    - making_meshes_files
      - figure-html
        
        unnamed-chunk-5-1.png
        
        299.0 kB
        
        unnamed-chunk-6-1.png
        
        266.7 kB
        
        unnamed-chunk-7-1.png
        
        236.8 kB
    - selecting_random_synapses.html
      
      18.4 kB
    - selecting_random_synapses_files
      - figure-html
        
        unnamed-chunk-11-1.png
        
        136.9 kB
    - xform_brain.html
      
      16.5 kB
    - xform_brain_files
      - figure-html
        
        unnamed-chunk-2-1.png
        
        176.8 kB
        
        unnamed-chunk-3-1.png
        
        127.7 kB
        
        unnamed-chunk-4-1.png
        
        127.7 kB
        
        unnamed-chunk-5-1.png
        
        353.1 kB
        
        unnamed-chunk-6-1.png
        
        62.4 kB
        
        unnamed-chunk-7-1.png
        
        62.4 kB
  - authors.html
    
    4.8 kB
  - docsearch.css
    
    11.8 kB
  - docsearch.js
    
    2.0 kB
  - index.html
    
    12.5 kB
  - jquery.sticky-kit.min.js
    
    2.8 kB
  - link.svg
    
    810 Bytes
  - news
    - index.html
      
      10.5 kB
  - pkgdown.css
    
    4.0 kB
  - pkgdown.js
    
    3.2 kB
  - pkgdown.yml
    
    263 Bytes
  - reference
    - FAFB.html
      
      8.6 kB
    - FAFB.surf.html
      
      10.4 kB
    - dense_core_neurons-1.png
      
      62.3 kB
    - dense_core_neurons.html
      
      6.5 kB
    - distal_to-1.png
      
      75.7 kB
    - distal_to.html
      
      9.6 kB
    - elm.landmarks.html
      
      8.7 kB
    - elmr-package.html
      
      11.5 kB
    - fafb_world_mapper.html
      
      8.6 kB
    - fetchn_fafb.html
      
      9.5 kB
    - index.html
      
      11.5 kB
    - nblast_fafb.html
      
      12.7 kB
    - open_fafb.html
      
      15.5 kB
    - plot3d.ngraph.html
      
      6.7 kB
    - simplify_neuron-1.png
      
      87.4 kB
    - simplify_neuron-2.png
      
      78.9 kB
    - simplify_neuron.html
      
      10.3 kB
    - stitch_neuron.html
      
      6.4 kB
    - stitch_neurons.html
      
      8.5 kB
    - summarise_contribution.html
      
      12.4 kB
    - tpsreg-1.png
      
      150.2 kB
    - tpsreg.html
      
      13.6 kB
    - unspike-1.png
      
      154.2 kB
    - unspike.html
      
      10.2 kB
- elmr.Rproj
  
  373 Bytes
- inst
  - WORDLIST
    
    409 Bytes
  - elm
    - lm-em-landmarks.csv
      
      17.5 kB
- man
  - FAFB.Rd
    
    1.5 kB
  - FAFB.surf.Rd
    
    2.3 kB
  - dense_core_neurons.Rd
    
    727 Bytes
  - distal_to.Rd
    
    1.8 kB
  - elm.landmarks.Rd
    
    1.4 kB
  - elmr-package.Rd
    
    3.3 kB
  - fafb_world_mapper.Rd
    
    1.5 kB
  - fetchn_fafb.Rd
    
    1.8 kB
  - nblast_fafb.Rd
    
    3.4 kB
  - open_fafb.Rd
    
    3.1 kB
  - plot3d.ngraph.Rd
    
    640 Bytes
  - simplify_neuron.Rd
    
    2.0 kB
  - stitch_neuron.Rd
    
    640 Bytes
  - stitch_neurons.Rd
    
    1.5 kB
  - summarise_contribution.Rd
    
    2.0 kB
  - tpsreg.Rd
    
    2.8 kB
  - unspike.Rd
    
    1.9 kB
- tests
  - spelling.R
    
    60 Bytes
  - testthat
    - test-fetchn.R
      
      287 Bytes
    - test-ngraph.R
      
      905 Bytes
    - test-open_fafb.R
      
      1.9 kB
    - test-simplify_neuron.R
      
      1.1 kB
    - test-stitch_neuron.R
      
      433 Bytes
    - test-transforms.R
      
      1.8 kB
    - testdata
      - simplify_neuron_1branch_spine.rds
        
        4.4 kB
      - simplify_neuron_ref.rds
        
        2.2 kB
      - stitch_neurons_ref.rds
        
        451 Bytes
      - test_neurons.rds
        
        1.1 kB
  - testthat.R
    
    52 Bytes
- vignettes
  - articles
    - .gitignore
      
      12 Bytes
    - multiple_somata.Rmd
      
      5.1 kB
  - landmarks.Rmd
    
    6.2 kB
  - making_meshes.Rmd
    
    2.8 kB
  - selecting_random_synapses.Rmd
    
    4.4 kB
  - xform_brain.Rmd
    
    4.7 kB

jefferis/elmr-v0.5.5.zip