Dataset Open Access
Mehmet Tekman
<?xml version='1.0' encoding='UTF-8'?> <record xmlns="http://www.loc.gov/MARC21/slim"> <leader>00000nmm##2200000uu#4500</leader> <datafield tag="041" ind1=" " ind2=" "> <subfield code="a">eng</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">single-cell RNA-seq</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">scRNA</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">Mus Musculus</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">Training Data</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">mm10</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">celseq2</subfield> </datafield> <controlfield tag="005">20200124192547.0</controlfield> <controlfield tag="001">1345635</controlfield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">1344</subfield> <subfield code="z">md5:b7d517de7df1f26170e8322783657fc4</subfield> <subfield code="u">https://zenodo.org/record/1345635/files/celseq_barcodes.192.tabular</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">264668243</subfield> <subfield code="z">md5:f70b5a1f8985d1d150538987bbf6b1fc</subfield> <subfield code="u">https://zenodo.org/record/1345635/files/Mus_musculus.GRCm38.93.mm10.UCSC.ncbiRefSeq.gtf</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">1064613</subfield> <subfield code="z">md5:8b57e74c0e17da35bc9fc7a16bdb3ed3</subfield> <subfield code="u">https://zenodo.org/record/1345635/files/P1_B1.tabular</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">1009137</subfield> <subfield code="z">md5:26a6cb201287104660ac3775b6544f8c</subfield> <subfield code="u">https://zenodo.org/record/1345635/files/P1_B2.tabular</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">999182</subfield> <subfield code="z">md5:a46c5da6449d6ab687897e91fb568846</subfield> <subfield code="u">https://zenodo.org/record/1345635/files/P2_B3.tabular</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">1090250</subfield> <subfield code="z">md5:6cb933303c03684fd53ef88256e7c81c</subfield> <subfield code="u">https://zenodo.org/record/1345635/files/P2_B4.tabular</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">239104517</subfield> <subfield code="z">md5:09b7efb0fb38fa1fdcc9d397e06032ce</subfield> <subfield code="u">https://zenodo.org/record/1345635/files/SRR5683689_1.fastq.gz</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">686626827</subfield> <subfield code="z">md5:aae3e3f24fcf2be55374320a6cdb9990</subfield> <subfield code="u">https://zenodo.org/record/1345635/files/SRR5683689_2.fastq.gz</subfield> </datafield> <datafield tag="542" ind1=" " ind2=" "> <subfield code="l">open</subfield> </datafield> <datafield tag="260" ind1=" " ind2=" "> <subfield code="c">2018-08-15</subfield> </datafield> <datafield tag="909" ind1="C" ind2="O"> <subfield code="p">openaire_data</subfield> <subfield code="p">user-galaxy-training</subfield> <subfield code="o">oai:zenodo.org:1345635</subfield> </datafield> <datafield tag="100" ind1=" " ind2=" "> <subfield code="u">Albert-Ludwigs-Universität Freiburg</subfield> <subfield code="a">Mehmet Tekman</subfield> </datafield> <datafield tag="245" ind1=" " ind2=" "> <subfield code="a">Training material for single-cell RNA-seq data analysis (Galaxy Training Network tutorial)</subfield> </datafield> <datafield tag="980" ind1=" " ind2=" "> <subfield code="a">user-galaxy-training</subfield> </datafield> <datafield tag="540" ind1=" " ind2=" "> <subfield code="u">https://creativecommons.org/licenses/by-sa/4.0/legalcode</subfield> <subfield code="a">Creative Commons Attribution Share Alike 4.0 International</subfield> </datafield> <datafield tag="650" ind1="1" ind2="7"> <subfield code="a">cc-by</subfield> <subfield code="2">opendefinition.org</subfield> </datafield> <datafield tag="520" ind1=" " ind2=" "> <subfield code="a"><p>The data provided here is part of the Galaxy Training Network tutorial that analyses single-cell RNA-seq data (scRNA) using cell barcodes and data from Freiburg MPI Gr&uuml;n Lab. This dataset (GEO Accession: <strong>GSM2668223</strong>) consists of paired-end data from the bone marrow of a 5-week old male C57 mouse, downsampled to facilitate ease-of-processing during live demonstration.</p> <p>The Plate/Batch datasets were generated from scripts.</p></subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">isVersionOf</subfield> <subfield code="a">10.5281/zenodo.1345634</subfield> </datafield> <datafield tag="024" ind1=" " ind2=" "> <subfield code="a">10.5281/zenodo.1345635</subfield> <subfield code="2">doi</subfield> </datafield> <datafield tag="980" ind1=" " ind2=" "> <subfield code="a">dataset</subfield> </datafield> </record>
All versions | This version | |
---|---|---|
Views | 7,017 | 341 |
Downloads | 2,504 | 165 |
Data volume | 207.8 GB | 32.1 GB |
Unique views | 6,671 | 322 |
Unique downloads | 895 | 71 |