Dataset Open Access
Training material for single-cell RNA-seq data analysis (Galaxy Training Network tutorial)
Mehmet Tekman
The data provided here is part of the Galaxy Training Network tutorial that analyses single-cell RNA-seq data (scRNA) using cell barcodes and data from Freiburg MPI Grün Lab. This dataset (GEO Accession: GSM2668223) consists of paired-end data from the bone marrow of a 5-week old male C57 mouse, downsampled to facilitate ease-of-processing during live demonstration.
The Plate/Batch datasets were generated from scripts.
Files
(1.2 GB)
| Name | Size | |
|---|---|---|
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celseq_barcodes.192.tabular
md5:b7d517de7df1f26170e8322783657fc4 |
1.3 kB | Download |
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Mus_musculus.GRCm38.93.mm10.UCSC.ncbiRefSeq.gtf
md5:f70b5a1f8985d1d150538987bbf6b1fc |
264.7 MB | Download |
|
P1_B1.tabular
md5:8b57e74c0e17da35bc9fc7a16bdb3ed3 |
1.1 MB | Download |
|
P1_B2.tabular
md5:26a6cb201287104660ac3775b6544f8c |
1.0 MB | Download |
|
P2_B3.tabular
md5:a46c5da6449d6ab687897e91fb568846 |
999.2 kB | Download |
|
P2_B4.tabular
md5:6cb933303c03684fd53ef88256e7c81c |
1.1 MB | Download |
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SRR5683689_1.fastq.gz
md5:09b7efb0fb38fa1fdcc9d397e06032ce |
239.1 MB | Download |
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SRR5683689_2.fastq.gz
md5:aae3e3f24fcf2be55374320a6cdb9990 |
686.6 MB | Download |
6,115
2,005
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 6,115 | 340 |
| Downloads | 2,005 | 165 |
| Data volume | 172.6 GB | 32.1 GB |
| Unique views | 5,842 | 321 |
| Unique downloads | 690 | 71 |
Indexed in
- Publication date:
- August 15, 2018
- DOI:
-
- Keyword(s):
- single-cell RNA-seq scRNA Mus Musculus Training Data mm10 celseq2
- Communities:
- License (for files):
- Creative Commons Attribution Share Alike 4.0 International