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Published August 10, 2018 | Version 1.1
Software Open

nf-core/methylseq: nf-core/methylseq version 1.1

  • 1. Science for Life Laboratory
  • 2. @qbicsoftware
  • 3. QBiC @qbicsoftware
  • 4. Comparative Bioinformatics, CRG
  • 5. @SciLifeLab | Karolinska Institutet
  • 6. Genome Institute of Singapore

Description

  • Tests simplified - now work by simply using the test config profile
    • eg: nextflow run nf-core/methylseq -profile test,docker
    • Removed previous run_test.sh script and data
  • New Singularity build script for direct compatibility with singularity-hub
  • Minor improvements to the docs
  • A number of boilerplate nf-core code updates
  • Updated process$name nextflow syntax to avoid warnings in new versions of nextflow
  • Updated software tools
    • trim-galore v0.4.5 update to 0.5.0
    • samtools v1.8 update to 1.9
    • bowtie2 v2.3.4.1 update to 2.3.4.2
    • multiqc v1.5 update to 1.6
    • picard v2.18.2 update to 2.18.11
    • bwameth v0.2.0 update to 0.2.2

Files

nf-core/methylseq-1.1.zip

Files (1.8 MB)

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md5:743fc79baab50f400036ed9919b24a94
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Additional details

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