Published August 10, 2018
| Version 1.1
Software
Open
nf-core/methylseq: nf-core/methylseq version 1.1
- 1. Science for Life Laboratory
- 2. @qbicsoftware
- 3. QBiC @qbicsoftware
- 4. Comparative Bioinformatics, CRG
- 5. @SciLifeLab | Karolinska Institutet
- 6. Genome Institute of Singapore
Description
- Tests simplified - now work by simply using the
test
config profile- eg:
nextflow run nf-core/methylseq -profile test,docker
- Removed previous
run_test.sh
script and data
- eg:
- New
Singularity
build script for direct compatibility with singularity-hub - Minor improvements to the docs
- A number of boilerplate nf-core code updates
- Updated
process$name
nextflow syntax to avoid warnings in new versions of nextflow - Updated software tools
trim-galore
v0.4.5
update to0.5.0
samtools
v1.8
update to1.9
bowtie2
v2.3.4.1
update to2.3.4.2
multiqc
v1.5
update to1.6
picard
v2.18.2
update to2.18.11
bwameth
v0.2.0
update to0.2.2
Files
nf-core/methylseq-1.1.zip
Files
(1.8 MB)
Name | Size | Download all |
---|---|---|
md5:743fc79baab50f400036ed9919b24a94
|
1.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/nf-core/methylseq/tree/1.1 (URL)