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Data for Galaxy CLIP-Seq Training Material

Florian Heyl


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<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Florian Heyl</dc:creator>
  <dc:date>2018-08-03</dc:date>
  <dc:description>The eCLIP data provided here is a subset of the eCLIP data of RBFOX2 from a study published by Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). The dataset contains the first biological replicate of RBFOX2 CLIP-seq and the input control experiment (*fastq files). The data was changed and downsampled to reduce data processing time, thus the datasets does not correspond to the original data pulled from Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). Also included is a text file (.txt) encompassing the chromosome sizes of hg19 obtained from UCSC (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes) and a genome annotation (.gtf) file taken from Ensembl (http://ftp.ensemblorg.ebi.ac.uk/pub/release-74/gtf/homo_sapiens/). The data is used for a galaxy training course about CLIP-Seq data analysis. </dc:description>
  <dc:identifier>https://zenodo.org/record/1327423</dc:identifier>
  <dc:identifier>10.5281/zenodo.1327423</dc:identifier>
  <dc:identifier>oai:zenodo.org:1327423</dc:identifier>
  <dc:relation>doi:10.5281/zenodo.1327370</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>http://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:subject>CLIP-Seq</dc:subject>
  <dc:subject>Human</dc:subject>
  <dc:subject>RBFOX2</dc:subject>
  <dc:subject>Splicing Factor</dc:subject>
  <dc:subject>eCLIP</dc:subject>
  <dc:title>Data for Galaxy CLIP-Seq Training Material</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
</oai_dc:dc>
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