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Data for Galaxy CLIP-Seq Training Material

Florian Heyl


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{
  "description": "<p>The eCLIP data provided here is a subset of the eCLIP data of RBFOX2 from a study published by Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). The dataset contains the first biological replicate of RBFOX2 CLIP-seq and the input control experiment (*fastq files).&nbsp;The data was changed and downsampled&nbsp;to reduce data processing time, thus the datasets&nbsp;does not correspond to the original data pulled from&nbsp;Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). Also included is a text file (.txt) encompassing the&nbsp;chromosome sizes of hg19 obtained from UCSC (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes) and a&nbsp;genome annotation (.gtf) file taken from Ensembl (http://ftp.ensemblorg.ebi.ac.uk/pub/release-74/gtf/homo_sapiens/). The data is used for a galaxy training course about CLIP-Seq data analysis.&nbsp;</p>", 
  "license": "http://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "Institut of Computer Science, Albert-Ludwigs-Universit\u00e4t Freiburg,  MeInBio - BioInMe Research Training Group", 
      "@type": "Person", 
      "name": "Florian Heyl"
    }
  ], 
  "url": "https://zenodo.org/record/1327423", 
  "datePublished": "2018-08-03", 
  "keywords": [
    "CLIP-Seq", 
    "Human", 
    "RBFOX2", 
    "Splicing Factor", 
    "eCLIP"
  ], 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/102d29d5-2180-490b-be7c-bb0e4ca7b109/hg19_chr_sizes.txt", 
      "@type": "DataDownload", 
      "fileFormat": "txt"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/102d29d5-2180-490b-be7c-bb0e4ca7b109/Homo_sapiens.GRCh37.74.gtf", 
      "@type": "DataDownload", 
      "fileFormat": "gtf"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/102d29d5-2180-490b-be7c-bb0e4ca7b109/RBFOX2-204-CLIP_S1_R1_RBFOX2.fastq", 
      "@type": "DataDownload", 
      "fileFormat": "fastq"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/102d29d5-2180-490b-be7c-bb0e4ca7b109/RBFOX2-204-CLIP_S1_R2_RBFOX2.fastq", 
      "@type": "DataDownload", 
      "fileFormat": "fastq"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/102d29d5-2180-490b-be7c-bb0e4ca7b109/RBFOX2-204-INPUT_S2_R1.fastq", 
      "@type": "DataDownload", 
      "fileFormat": "fastq"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/102d29d5-2180-490b-be7c-bb0e4ca7b109/RBFOX2-204-INPUT_S2_R2.fastq", 
      "@type": "DataDownload", 
      "fileFormat": "fastq"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.1327423", 
  "@id": "https://doi.org/10.5281/zenodo.1327423", 
  "@type": "Dataset", 
  "name": "Data for Galaxy CLIP-Seq Training Material"
}
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