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Dataset Open Access

Data for Galaxy CLIP-Seq Training Material

Florian Heyl


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.1327423", 
  "title": "Data for Galaxy CLIP-Seq Training Material", 
  "issued": {
    "date-parts": [
      [
        2018, 
        8, 
        3
      ]
    ]
  }, 
  "abstract": "<p>The eCLIP data provided here is a subset of the eCLIP data of RBFOX2 from a study published by Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). The dataset contains the first biological replicate of RBFOX2 CLIP-seq and the input control experiment (*fastq files).&nbsp;The data was changed and downsampled&nbsp;to reduce data processing time, thus the datasets&nbsp;does not correspond to the original data pulled from&nbsp;Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). Also included is a text file (.txt) encompassing the&nbsp;chromosome sizes of hg19 obtained from UCSC (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes) and a&nbsp;genome annotation (.gtf) file taken from Ensembl (http://ftp.ensemblorg.ebi.ac.uk/pub/release-74/gtf/homo_sapiens/). The data is used for a galaxy training course about CLIP-Seq data analysis.&nbsp;</p>", 
  "author": [
    {
      "family": "Florian Heyl"
    }
  ], 
  "type": "dataset", 
  "id": "1327423"
}
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