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Assessment of Dickeya and Pectobacterium spp. on potatoes and ornamentals (Dickeya)

van der Wolf, Jan; Bergsma-Vlami, Maria; Degefu, Yeshitila; Müller, Petra; Hélias, Valérie; Saddler, Gerry; de Werra, Patrice; Keiser, Andreas; Dupuis, Brice; Schaerer, Santiago; Pirhonen, Minna; Tsror, Leah; Maes, Martine; van Vaerenbergh, Johan; Lojkowska, Ewa; van der Waals, Jacquie; van Gijseghem, Frédérique; Toth, Ian


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  <identifier identifierType="DOI">10.5281/zenodo.1326504</identifier>
  <creators>
    <creator>
      <creatorName>van der Wolf, Jan</creatorName>
      <givenName>Jan</givenName>
      <familyName>van der Wolf</familyName>
      <affiliation>Wageningen University (WUR), Wegningen, The Netherlands</affiliation>
    </creator>
    <creator>
      <creatorName>Bergsma-Vlami, Maria</creatorName>
      <givenName>Maria</givenName>
      <familyName>Bergsma-Vlami</familyName>
      <affiliation>National Plant Protection Organization (NVWA), Wageningen, The Netherlands</affiliation>
    </creator>
    <creator>
      <creatorName>Degefu, Yeshitila</creatorName>
      <givenName>Yeshitila</givenName>
      <familyName>Degefu</familyName>
      <affiliation>Natural Resources Institute Finland (LUKE), Helsinki, Finland</affiliation>
    </creator>
    <creator>
      <creatorName>Müller, Petra</creatorName>
      <givenName>Petra</givenName>
      <familyName>Müller</familyName>
      <affiliation>Julius Kühn-Institute (JKI), Kleinmachnow, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Hélias, Valérie</creatorName>
      <givenName>Valérie</givenName>
      <familyName>Hélias</familyName>
      <affiliation>National Federation of Potato Producers (FN3PT), Le Rheu, France</affiliation>
    </creator>
    <creator>
      <creatorName>Saddler, Gerry</creatorName>
      <givenName>Gerry</givenName>
      <familyName>Saddler</familyName>
      <affiliation>Science and Advice for Scottish Agriculture (SASA), Edinburgh, United Kingdom</affiliation>
    </creator>
    <creator>
      <creatorName>de Werra, Patrice</creatorName>
      <givenName>Patrice</givenName>
      <familyName>de Werra</familyName>
      <affiliation>Bern University of Applied Sciences (BFH), Zollikofen, Switzerland</affiliation>
    </creator>
    <creator>
      <creatorName>Keiser, Andreas</creatorName>
      <givenName>Andreas</givenName>
      <familyName>Keiser</familyName>
      <affiliation>Bern University of Applied Sciences (BFH), Zollikofen, Switzerland</affiliation>
    </creator>
    <creator>
      <creatorName>Dupuis, Brice</creatorName>
      <givenName>Brice</givenName>
      <familyName>Dupuis</familyName>
      <affiliation>Agroscope, Nyon, Switzerland</affiliation>
    </creator>
    <creator>
      <creatorName>Schaerer, Santiago</creatorName>
      <givenName>Santiago</givenName>
      <familyName>Schaerer</familyName>
      <affiliation>Agroscope, Nyon, Switzerland</affiliation>
    </creator>
    <creator>
      <creatorName>Pirhonen, Minna</creatorName>
      <givenName>Minna</givenName>
      <familyName>Pirhonen</familyName>
      <affiliation>University of Helsinki (UoH), Helsinki, Finland</affiliation>
    </creator>
    <creator>
      <creatorName>Tsror, Leah</creatorName>
      <givenName>Leah</givenName>
      <familyName>Tsror</familyName>
      <affiliation>Volcani Center, Israel</affiliation>
    </creator>
    <creator>
      <creatorName>Maes, Martine</creatorName>
      <givenName>Martine</givenName>
      <familyName>Maes</familyName>
      <affiliation>Institute for Agricultural and Fisheries Research (ILVO), Merelbeke, Belgium</affiliation>
    </creator>
    <creator>
      <creatorName>van Vaerenbergh, Johan</creatorName>
      <givenName>Johan</givenName>
      <familyName>van Vaerenbergh</familyName>
      <affiliation>Institute for Agricultural and Fisheries Research (ILVO), Merelbeke, Belgium</affiliation>
    </creator>
    <creator>
      <creatorName>Lojkowska, Ewa</creatorName>
      <givenName>Ewa</givenName>
      <familyName>Lojkowska</familyName>
      <affiliation>University of Gdansk (UG), Gdansk, Poland</affiliation>
    </creator>
    <creator>
      <creatorName>van der Waals, Jacquie</creatorName>
      <givenName>Jacquie</givenName>
      <familyName>van der Waals</familyName>
      <affiliation>University of Pretoria (UP), Pretoria, South Africa</affiliation>
    </creator>
    <creator>
      <creatorName>van Gijseghem, Frédérique</creatorName>
      <givenName>Frédérique</givenName>
      <familyName>van Gijseghem</familyName>
      <affiliation>Pierre and Marie Curie University (UPMC), Paris, France</affiliation>
    </creator>
    <creator>
      <creatorName>Toth, Ian</creatorName>
      <givenName>Ian</givenName>
      <familyName>Toth</familyName>
      <affiliation>James Hutton Institute (JHI), Dundee, United Kingdom</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Assessment of Dickeya and Pectobacterium spp. on potatoes and ornamentals (Dickeya)</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <subjects>
    <subject>Euphresco, plant health, diagnostics, ornamentals, potato, characterization,  Pectobacterium spp., Dickeya spp.</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2017-01-01</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Text">Report</resourceType>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1326504</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.1326503</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Pectinolytic bacteria, namely the genera Pectobacterium and Dickeya, are economically important pathogens causing potato blackleg and potato soft rot in different European countries. Main aim of this EUPHRESCO-II project was to monitor the emergence and incidence of Dickeya and Pectobacterium in the potato production system (plants and tubers) as well as in ornamentals in different countries. More specifically, the presence of different (new variants) of Dickeya and Pectobacterium species was evaluated, in particular Dickeya solani, Pectobacterium wasabiae and Pectobacterium carotovorum subsp. brasiliense, as well as their dissemination pathways to clean potato lots. We need to better understand the spread of different (new variants) of Dickeya and Pectobacterium species in the environment, across stocks and through generations. In order to achieve this, we need to better understand the pathogens involved and, therefore, improvements to taxonomy and diagnostics have been very important as well as measuring strain type and movement in a field situation. This EUPHRESCO-II project also includes the comparison of the virulence of Dickeya species, among them D. solani and D. dianthicola in the potato environment. Additionally, the characterisation of Pectobacterium atrosepticum isolates based on a MLSA approach on 8 housekeeping genes has been studied in Scotland&lt;/p&gt;</description>
    <description descriptionType="Other">Scientific report of the Euphresco funded project 'Assessment of Dickeya sp. and Pectobacterium spp. on potatoes and ornamentals' (Dickeya)</description>
  </descriptions>
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