1323831
doi
10.5281/zenodo.1323831
oai:zenodo.org:1323831
user-ro
Di Tommaso, Paolo
Centre for Genomic Regulation (CRG).The Barcelona Institute for Science and Technology
Notredame, Cedric
Centre for Genomic Regulation (CRG).The Barcelona Institute for Science and Technology
Nextflow integration for the Research Object Specification
Garriga Nogales, Edgar
Centre for Genomic Regulation (CRG).The Barcelona Institute for Science and Technology
doi:10.5281/zenodo.1215611
doi:10.1038/nbt.3820
doi:10.1016/j.websem.2015.01.003
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
nextflow
research object
reproducibility
provenance
<p><strong>For reproducibility criteria to be met in a scientific context an increasing number of conditions need to be fulfilled. These conditions, explicited by the FAIR principle include traceability, reusability and data/methods permanent availability (findable). The challenge is not only to keep the right elements bundled together, but also to keep track of each component individual history (including individual updates) while associating every computational analysis with a transparent source. This issue, known as provenance, is the one we have been addressing in the context of this proposal. It is increasingly critical, at a time when a growing number of computational procedures are used to assess medical risks and take therapeutic decision. Our solution involves using the Research Object (RO) specification that have allowed us to implement a method that enables the creation of a package collecting all provenance metadata of a computational experiment, so that it can be easily shared, archived and reproduced when needed</strong></p>
Preprint submitted to RO2018 workshop at IEEE eScience Conference 2018
Zenodo
2018-07-30
info:eu-repo/semantics/conferencePaper
1323830
user-ro
1579542300.158236
124298
md5:d7053a0f35b45739ff5c91a5ac87f30d
https://zenodo.org/records/1323831/files/EdgarGarrigaRO2018 .pdf
public
10.5281/zenodo.1215611
Cites
doi
10.1038/nbt.3820
Cites
doi
10.1016/j.websem.2015.01.003
Cites
doi
10.5281/zenodo.1323830
isVersionOf
doi